| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,621,902 – 12,621,994 |
| Length | 92 |
| Max. P | 0.851986 |
| Location | 12,621,902 – 12,621,994 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 59.24 |
| Mean single sequence MFE | -22.92 |
| Consensus MFE | -10.35 |
| Energy contribution | -10.29 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.851986 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12621902 92 - 22224390 UAUAUGGGAGAGAUAC-------AUCGGAUAAGAUCCG---AUAGCGAUAGAUAGAACAAGUUCCAAAACAAAAAACAAAUGCUUGUUCUCGGACCUAAUCA---- ....((((........-------(((((((...)))))---))..........(((((((((...................)))))))))....))))....---- ( -19.61) >DroPse_CAF1 40151 88 - 1 U----GGGGCCCACAACUUAUGGAUCUGAUCUGAUCCGUGUAUCCGGGCCGGUAUAAUAAGUUCCAAU-GG-----CAAAUGUUUGUG--UGUACCUAUG------ .----..(((((......((((((((......)))))))).....)))))(((((((((((.......-..-----......))))).--))))))....------ ( -26.66) >DroAna_CAF1 14778 103 - 1 UAUAUAGACGAUAUAGUACUUGAUUCUGAUCAGAUCAAGGAACAGAACGAGAGAAAACAAGUUCCAAAAGGCAAAACA-AUGCUUGUU--UGUACCUAAUAAAGAA ..(((((((.........((((.(((((.((........)).))))))))).................(((((.....-.))))))))--))))............ ( -18.20) >DroPer_CAF1 53473 88 - 1 U----GGGGCCCACAACUUAUGGAUCUGAUCUGAUCCGUGUAUCCGGGCCGGUAUAAUAAGUUCCAAA-GG-----CAAAUGUUUGUG--UGUACCUAUG------ .----..(((((......((((((((......)))))))).....)))))((((((........((.(-((-----(....)))).))--))))))....------ ( -27.20) >consensus U____GGGGCACACAACUUAUGGAUCUGAUCAGAUCCGUGUAUACGGGCAGAUAUAACAAGUUCCAAA_GG_____CAAAUGCUUGUG__UGUACCUAAG______ .....(((((((......((((((((......)))))))).....)))).......((((((...................)))))).......)))......... (-10.35 = -10.29 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:39 2006