Locus 4856

Sequence ID X_DroMel_CAF1
Location 12,616,621 – 12,616,724
Length 103
Max. P 0.704294
window7931

overview

Window 1

Location 12,616,621 – 12,616,724
Length 103
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 69.21
Mean single sequence MFE -18.20
Consensus MFE -8.19
Energy contribution -7.03
Covariance contribution -1.16
Combinations/Pair 1.28
Mean z-score -2.29
Structure conservation index 0.45
SVM decision value 0.36
SVM RNA-class probability 0.704294
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12616621 103 - 22224390
AAUAACAUUUGCGUUCCGCUUUUCGUUUUGCACAAAAUGAAUUUUGUUGUAGGAAGCUACAUAGAAAUUAAAAAAAAAAUAAAGAAAGAGGAAAUGAAACUGU
....(((.((...((((.(((((((((((....))))))((((((..(((((....)))))..))))))..............))))).))))....)).))) ( -19.20)
>DroSec_CAF1 5974 86 - 1
AAUAACAUUUGCGUU------------UCGCAGAAAAUGAAUUUUGUUGUAGGAAGCUA--UAGAAA---AAAAAGAAAAAAAAAAAGAGGAAAUGAAACUGU
....(((.((.((((------------((((((((......))))))(((((....)))--))....---....................)))))).)).))) ( -12.10)
>DroEre_CAF1 6527 86 - 1
AAUAACAUUUGCGUUCCGCA--GCGUUUUGCGCAAAAUUAAUUUCGCUGUAGGUAACUG--CGGGAG---AAAAG----------CAAUGGAAAUGAAACUGU
.....(((((.((((..((.--(((.....)))........((((.((((((....)))--))))))---)...)----------))))).)))))....... ( -23.30)
>consensus
AAUAACAUUUGCGUUCCGC____CGUUUUGCACAAAAUGAAUUUUGUUGUAGGAAGCUA__UAGAAA___AAAAA_AAA_AAA_AAAGAGGAAAUGAAACUGU
.....((((((((...((.....))...)))..........(((((...(((....)))..))))).........................)))))....... ( -8.19 =  -7.03 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:38 2006