Locus 4854

Sequence ID X_DroMel_CAF1
Location 12,611,894 – 12,611,988
Length 94
Max. P 0.567478
window7929

overview

Window 9

Location 12,611,894 – 12,611,988
Length 94
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 91.85
Mean single sequence MFE -26.02
Consensus MFE -20.62
Energy contribution -21.38
Covariance contribution 0.75
Combinations/Pair 1.14
Mean z-score -1.59
Structure conservation index 0.79
SVM decision value 0.07
SVM RNA-class probability 0.567478
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12611894 94 - 22224390
ACCGCAUCCGCAAUUUGUGGUGUUGCGGUCGA-ACCUG-CACCUUCG-AAUCGGCAACAAAUGCCCAGCAACGCCUACGUCACUUGCAACAAUUCCA
.........((((..(((((((((((((((((-(....-....))))-.)))((((.....))))..)))))))).)))....)))).......... ( -28.10)
>DroSec_CAF1 1276 97 - 1
ACCGCAUCCGCAAUUUGUGGGGUUGCGGUCGAAACCUGCCACCUUCGGAAUCGGCCACUAAUGCCCAGCAACGCCUACGUCACUUGCAACAAUUCCA
.........((((..(((((((((((((((((..((..........))..)))))).(....)....))))).))))))....)))).......... ( -27.60)
>DroSim_CAF1 1276 96 - 1
ACCGCAUCCGCAAUUUGUGGUGUUGCGGUCGA-ACCUGCCACCUUCGGAAUCGGCAACAAAUGCCCAGCAACGCCUACGUCACUUGCAACAAUUCCA
((((((.((((.....))))...))))))...-.............(((((.((((.....))))..((((((....)))....)))....))))). ( -26.90)
>DroEre_CAF1 1488 93 - 1
ACCGCAUCCGCAAUUCGUG-UGUUGCGGUCGA-ACCUG-CACCUUCG-UAUCAGCAACAAAUGCCCGGCUGCACCUACGUCACUUGCAACAAUUCCG
.........((((..((((-.((.(((((((.-...((-(......)-))...(((.....))).))))))))).))))....)))).......... ( -21.50)
>consensus
ACCGCAUCCGCAAUUUGUGGUGUUGCGGUCGA_ACCUG_CACCUUCG_AAUCGGCAACAAAUGCCCAGCAACGCCUACGUCACUUGCAACAAUUCCA
.........((((..((((((((((((((....)))................((((.....))))..)))))))).)))....)))).......... (-20.62 = -21.38 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:36 2006