Locus 4853

Sequence ID X_DroMel_CAF1
Location 12,610,046 – 12,610,137
Length 91
Max. P 0.656619
window7928

overview

Window 8

Location 12,610,046 – 12,610,137
Length 91
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 96.40
Mean single sequence MFE -21.55
Consensus MFE -20.50
Energy contribution -20.38
Covariance contribution -0.12
Combinations/Pair 1.08
Mean z-score -1.57
Structure conservation index 0.95
SVM decision value 0.26
SVM RNA-class probability 0.656619
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12610046 91 + 22224390
UUGAUGAGUUUGUUCUGGUUUCUUGGUGUUGCUUACUCAUCUAUACUUAGGUAGAUGUAAAUGUA--UAUGCUAUAUCUGCUGGCUCUACCGA
..(((((((..((.(..(....)..)....))..)))))))........((((((.(((.(((((--.....))))).)))....)))))).. ( -22.50)
>DroSec_CAF1 8015 93 + 1
UUGAUGAGAUUGUUCUGGGUUCUUGGUGUUGCUUACUCAUUUAUACUUAGGUAGAUGUAAAUGUAUAUAUGCUAUAUCUGCUGGCUCUACCGA
..((((((...((.(..(....)..)....))...))))))........((((((.((....(((.((((...)))).)))..)))))))).. ( -17.60)
>DroSim_CAF1 9414 93 + 1
UUGAUGAGUUUGUUCUGGUUUCUUGGUGUUGCUUACUCAUCUAUACUUAGGUAGAUGUAAAUGUAUAUAUGCUAUAUCUGCUGGCUCUACCGA
..(((((((..((.(..(....)..)....))..)))))))........((((((.((....(((.((((...)))).)))..)))))))).. ( -22.50)
>DroEre_CAF1 8393 91 + 1
UUGAUGAGUUUGUUCUGGUUUCUUGGUGUUGCUUACUCAUCUAUACUUAGGUAGAUGUAAGUGUA--UAUGCUAUAUCUGCUGGCUCUACCGA
..(((((((..((.(..(....)..)....))..)))))))........((((((.((.(((..(--(((...))))..))).)))))))).. ( -23.60)
>consensus
UUGAUGAGUUUGUUCUGGUUUCUUGGUGUUGCUUACUCAUCUAUACUUAGGUAGAUGUAAAUGUA__UAUGCUAUAUCUGCUGGCUCUACCGA
..(((((((..((.(..(....)..)....))..)))))))........((((((.(((.(((((.......))))).)))....)))))).. (-20.50 = -20.38 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:35 2006