| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,409,393 – 1,409,498 |
| Length | 105 |
| Max. P | 0.550321 |
| Location | 1,409,393 – 1,409,498 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 56.83 |
| Mean single sequence MFE | -23.53 |
| Consensus MFE | -10.46 |
| Energy contribution | -10.80 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1409393 105 - 22224390 CAUCCGCGCAGCCUCUAAGGCAGGCGAUGCUCAAUAUAUUAGCAACUAGGAGUGAGGAAAACAAAGUGGAUUUGAAAACCACAUCCGACGGGCUGCAGUUCAGGA ..((((((((((((....((((.....)))).................(((((.......))...((((.........)))).)))...))))))).))...))) ( -25.00) >DroSec_CAF1 14868 104 - 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGC-ACUAGAAGUGAGGAAAACGAAGUGGAUGUGAAAGCCACAUCCGACGGGCUGCAGUUUAGGA ...........................................-.(((((..((.((....((...((((((((.....)))))))).))..)).)).))))).. ( -17.70) >DroEre_CAF1 11206 97 - 1 -----GCGCAGCCUGUAGAGCAGGCGAUGUUCAAUAGACUAGCAAGCAGGAGUAGGGAAAGCGAAGUAGAAAUGAAUGCUGCAUCCGACGAGCUGC---UUAAAA -----..((((.((((.(((((.....))))).)))).)).))((((((..((.(((..((((...((....))..))))...))).))...))))---)).... ( -27.90) >consensus _____GCGCAGCCU_UA__GCAGGCGAUG_UCAAUA_A_UAGCAACUAGGAGUGAGGAAAACGAAGUGGAUAUGAAAGCCACAUCCGACGGGCUGCAGUUUAGGA .....(((..(((((.....)))))..)))..........(((.....(((((.......))...((((.........)))).))).....)))........... (-10.46 = -10.80 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:44 2006