Locus 4849

Sequence ID X_DroMel_CAF1
Location 12,600,600 – 12,600,710
Length 110
Max. P 0.863005
window7923

overview

Window 3

Location 12,600,600 – 12,600,710
Length 110
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 83.45
Mean single sequence MFE -35.44
Consensus MFE -17.55
Energy contribution -20.68
Covariance contribution 3.13
Combinations/Pair 1.11
Mean z-score -2.99
Structure conservation index 0.50
SVM decision value 0.84
SVM RNA-class probability 0.863005
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12600600 110 - 22224390
GUUUUAAGUGCUGAUAAAGCGGGAGAAAGGGGAAAUGGGCAAUUG--CUGUGUUGCACGCCAUUUCUCCUGUUCCUUCCACUACUUUUAUUGCUCACUCUUUUAUGCACGUA
.....(((((((.....)))(((((..((((((((((((((((..--....)))))...)))))))))))....)))))...))))....(((............))).... ( -32.10)
>DroSec_CAF1 9426 110 - 1
GCGUUAAGUGCUGAUAAAGUGGGAGGAAGGGGAAAUGGGCAAUUG--GUGUGUUGCACGCCAUUUCUCCUGUUCCUUCCACUACUUUUAUUGCUCACUCUUUUAUGCAAGUA
((((..((((..(((((((((((((((((((((((((((((((..--....)))))...)))))))))))..))))))))))....)))))...)))).....))))..... ( -43.10)
>DroSim_CAF1 8900 112 - 1
GUGUUAAGUGCUGAUAAAGCGGGAGAAAGGGGAAAUGGGCAAUUGCUGUGUGUUGCACGCCAUUUCUCCUGUUCCUUCCACUACUUUUAUUGCUCACUCUUUUAUGCAAGUA
.....(((((((.....)))(((((..(((((((((((((....)).(((.....))).)))))))))))....)))))...))))...((((............))))... ( -33.70)
>DroEre_CAF1 9483 108 - 1
GUGUUAAGUGGCGAUAAAGAGGAGGAAAGGGG-AAAUGGCAAUUG--CUG-GUUGCACGCCAUUUCUCCUGUUCCUUCCACUACUUUUAUUGCUCUCUCUUUUAUGCAAGCA
((((.(((.((((((((((.((((((((((((-(((((((...((--(..-...))).)))))))))))).)))).))).))....))))))))....)))..))))..... ( -40.20)
>DroYak_CAF1 8431 92 - 1
GUGUUAAGUGCUGAUAAAAAGAGGGA--GGGA-AAUAGGCAAUUG--CUG-UGUG--------------UGUUCCUUCCACUACUUUUAUUGCACUCUCUUUUAUGCCAGCA
......(((((.(((((((..(((((--((((-((((.(((....--.))-).))--------------).)))))))).))..))))))))))))................ ( -28.10)
>consensus
GUGUUAAGUGCUGAUAAAGAGGGAGAAAGGGGAAAUGGGCAAUUG__CUGUGUUGCACGCCAUUUCUCCUGUUCCUUCCACUACUUUUAUUGCUCACUCUUUUAUGCAAGUA
((((.(((.((.(((((((.(((((..((((((((((((((((........)))))...)))))))))))....))))).....))))))))).....)))..))))..... (-17.55 = -20.68 +   3.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:31 2006