Locus 4848

Sequence ID X_DroMel_CAF1
Location 12,600,038 – 12,600,154
Length 116
Max. P 0.595718
window7922

overview

Window 2

Location 12,600,038 – 12,600,154
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.29
Mean single sequence MFE -21.15
Consensus MFE -14.84
Energy contribution -14.52
Covariance contribution -0.32
Combinations/Pair 1.26
Mean z-score -1.73
Structure conservation index 0.70
SVM decision value 0.13
SVM RNA-class probability 0.595718
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12600038 116 + 22224390
ACUAACAUAACGCGCAAGUGUUAAGACUGAAAAUGGAAAUAGGGGCAGCGAACCGAAUAAAGGAAAUGGCAAACAAAUAGACAAUUUAUUU----AGCUGAUUAUAUGCAGCAUUCAAAU
.......((((((....))))))....((((..((.(.((((...((((...((.......))...........(((((((...)))))))----.)))).)))).).))...))))... ( -21.40)
>DroSec_CAF1 8868 116 + 1
ACUAAAAUGACGCGCAAGUGUUAAAACUGAAAAUGGAAAUAGUGGCAGCAAACCGAAUAAAGGAAAUGGCAAAAAAAUAAAGAAUUUAUUU----AGCUGAUUAUAUGCAGCAUUCAAAU
.......((((((....))))))....((((..((.(.(((((..((((...((.......))...........((((((.....))))))----.))))))))).).))...))))... ( -20.70)
>DroSim_CAF1 8340 116 + 1
ACUAAAAUGACGCGCAAGUGUUAAAACUGAAAAUGGAAAUAGUGGCAGCGAACCGAAUAAAGGAAAUGGCAAACAAAUAAAGAAUUUAUUU----AGCUGAUUAUAUGCAGCAUUCAAAU
.......((((((....))))))....((((..((.(.(((((..((((...((.......))...........((((((.....))))))----.))))))))).).))...))))... ( -20.70)
>DroEre_CAF1 8951 120 + 1
ACUGAAGUGACAUUCAAGUGUUAAGGCAGAAAAUGGGAAUAGUUGCAGCGAACUAAAUAAAAGAAAUGGCAAACAAAAGAACCAUUUAUUUACGUAGCUGAAUAUAUGCAGCAUUCAAAU
.(((...((((((....))))))...))).......((((.((((((.....(((..((((..((((((............)))))).))))..))).........)))))))))).... ( -23.74)
>DroYak_CAF1 7869 116 + 1
ACCAAAAUUACAUUCAAGUGUUAAGGCAGAAGGUGGAAAUAGUUGCAGCGAACUAAAUAAAAGAAAUGGCAAACAAAUAAACAAUUUGCUU----AACUGUUUGAAUGCAGCAUUCAAAU
..........(((((((..((((((.((((..((........((((......((.......)).....))))........))..)))))))----)))...)))))))............ ( -19.19)
>consensus
ACUAAAAUGACGCGCAAGUGUUAAGACUGAAAAUGGAAAUAGUGGCAGCGAACCGAAUAAAGGAAAUGGCAAACAAAUAAACAAUUUAUUU____AGCUGAUUAUAUGCAGCAUUCAAAU
.......((((((....)))))).....(((..((.(.((((...((((.....(((((((.......................))))))).....)))).)))).).))...))).... (-14.84 = -14.52 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:30 2006