| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,599,318 – 12,599,418 |
| Length | 100 |
| Max. P | 0.715850 |
| Location | 12,599,318 – 12,599,418 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 88.94 |
| Mean single sequence MFE | -14.70 |
| Consensus MFE | -13.15 |
| Energy contribution | -13.65 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.715850 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12599318 100 - 22224390 UUUUAAUAAAAGCGACUAC-UUUUUAUUUCGAUCUAUUUCGUAUGCAGUUAUUUCGAUUCUUUUUCUUCUCUUUUAUUUUUAUUUUCUGCUGCUGCGGCGA ....((((((((.((....-........((((...((..(.......)..)).))))..........)).))))))))........((((....))))... ( -10.65) >DroSec_CAF1 8179 101 - 1 UUUCAAUAAAAGCGACUACGUUUUUAUUUGGAUGUAUUUCGUAUGCAGUUAUUUCUAUUCUUUUUCUUCUACUUUAUUUUUAUUUUUUGCUGCUGCGGCGA .(((((((((((((....)))))))).)))))......(((((.(((((.......................................))))))))))... ( -17.23) >DroSim_CAF1 7620 101 - 1 UUUCAAUAAAAGCGACUACGUUUUUAUUUCGAUGUAUUUCGUAUGCAGUUAUUUCUAUUCUUUUUCUUCUACUUUAUUUUUAUUUUCUGCUGCUGCGGCGA ....((((((((((....))))))))))..........(((((.(((((.......................................))))))))))... ( -15.73) >DroEre_CAF1 8227 96 - 1 UUUUAAUAAAAGCGAUUACGUUUUUAUUUCGAUUUAUAUCGUAUGCAGGUAUUUCCUUCUUUUUCC---UCCUUUAUUUUUAUUUUU--CUGCUGCGGCGA ....((((((((((....))))))))))..........(((((.(((((.................---.................)--)))))))))... ( -15.18) >consensus UUUCAAUAAAAGCGACUACGUUUUUAUUUCGAUGUAUUUCGUAUGCAGUUAUUUCUAUUCUUUUUCUUCUACUUUAUUUUUAUUUUCUGCUGCUGCGGCGA ....((((((((((....))))))))))..........(((((.(((((.......................................))))))))))... (-13.15 = -13.65 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:29 2006