Locus 4843

Sequence ID X_DroMel_CAF1
Location 12,592,066 – 12,592,186
Length 120
Max. P 0.543963
window7913

overview

Window 3

Location 12,592,066 – 12,592,186
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 85.67
Mean single sequence MFE -50.55
Consensus MFE -38.35
Energy contribution -38.72
Covariance contribution 0.37
Combinations/Pair 1.30
Mean z-score -2.07
Structure conservation index 0.76
SVM decision value 0.02
SVM RNA-class probability 0.543963
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12592066 120 - 22224390
GUGUGGUCCAGCUUGAAUCUGCCAUCGGGGCUGGGCUGUGCCACAGUUCUCUAUCCAGAGGCAGCUGCUCUGCAUGCGGCCACCAUUCUGGGGCUGGGCAACUUCAUGGUCUGGUCGAAA
.(((((..(((((((..((((....))))..)))))))..))))).(((.....(((((((..(((((.......)))))..))..)))))(((..(((.........)))..)))))). ( -46.80)
>DroPse_CAF1 893 120 - 1
GUCUGGUCCAGCCUGAAUCUGCCCUCGGGCCUCGGCUGUGCCACCGUUCUCUAUCCGGAGGCGGCGGCCCUACAUGCCGCCACCAUUCUGGGCCUGGGCAACUUCAUGAUCUGGUCCAGA
.(((((.((((..((((..(((((..((((((.(..((.(((.(((.........))).)))((((((.......))))))..))..).)))))))))))..))))....)))).))))) ( -58.40)
>DroGri_CAF1 4414 120 - 1
GCAUGGUCCAGCCUCAAUUUGCCAUCGGGUCUGGGCUGUGCCACCGUCUUCUAUCCGGAGGCAGCCGCAUUACAUGCGGCAACCAUUUUGGGUCUGAGCAACUUUAUGAUUUGGUCCAAG
((((((((((((((............))).)))))))))))....((((((.....)))))).(((((((...))))))).......((((..(....((......))....)..)))). ( -44.90)
>DroEre_CAF1 79 120 - 1
GUCUGGUCCAGCUUGAAUCUGCCAUCCGGCUUGGGCUGUGCCACCGUCCUCUAUCCGGAGGCAGCUGCUCUCCAUGCGGCCACCAUUUUGGGGCUGGGCAACUUCAUGGUCUGGUCCAAG
...(((.((((((((((..((((....((...((((.(((((.(((.........))).)))).).)))).))...(((((.((.....)))))))))))..)))).)).)))).))).. ( -49.20)
>DroMoj_CAF1 3831 120 - 1
GCCUGGUCGAGCCUGAAUCUGCCGUCGGGCCUGGGCUGUGCCACUGUGCUCUAUCCGGAGGCAGCGGCGCUGCACGCGGCCACCAUUCUGGGCCUCAGCAACUUUAUGAUCUGGUCCAAG
...((((((.((((((........))))))....((.(((((.((((.((((....)))))))).))))).))...))))))......((((((....((......))....)))))).. ( -47.90)
>DroPer_CAF1 715 120 - 1
GUCUGGUCCAGCCUGAAUCUGCCCUCGGGCCUCGGCUGUGCCACCGUUCUUUAUCCGGAGGCGGCGGCCCUACAUGCCGCCACCAUUCUGGGCCUGGGCAACUUCAUGAUCUGGUCUAGA
.(((((.((((..((((..(((((..((((((.(..((.(((.(((.........))).)))((((((.......))))))..))..).)))))))))))..))))....)))).))))) ( -56.10)
>consensus
GUCUGGUCCAGCCUGAAUCUGCCAUCGGGCCUGGGCUGUGCCACCGUUCUCUAUCCGGAGGCAGCGGCCCUACAUGCGGCCACCAUUCUGGGCCUGGGCAACUUCAUGAUCUGGUCCAAA
...(((.((((..((((..((((..((((((..((.((((((.(((.........))).))))(((((.......)))))...)).))..))))))))))..))))....)))).))).. (-38.35 = -38.72 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:22 2006