| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,590,263 – 12,590,376 |
| Length | 113 |
| Max. P | 0.735331 |
| Location | 12,590,263 – 12,590,376 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 90.96 |
| Mean single sequence MFE | -19.93 |
| Consensus MFE | -15.87 |
| Energy contribution | -16.53 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.735331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12590263 113 - 22224390 CCCGCUCACAAGUGUCUGCUGUUGUUGGAAACAACAAUAAGCAAUAAGAAAUAUGAAUGGCAAAGCAAAUGUAACAAAAUGUUGAGAAAACUAAGGAAAACACAAAA--AAGACA .(((((......(((((((((((((((....))))))).))))...(....)......)))).))).....((((.....))))..........))...........--...... ( -20.60) >DroSec_CAF1 21490 113 - 1 CACACACACAAGUGUCUGCUGUUGUUGGAAACAACAAUAAGCAAUAAGAAAUAUGAAUGGCAAAGCAAAUGUAACAAAAUGUUGAGAAAACUAAGGAAAACACAAAA--GAGACA ...........((.(((((((((((((....))))))).))).......(((((.....(((.......)))......))))).......................)--)).)). ( -20.30) >DroYak_CAF1 10574 115 - 1 CCCCCUCACAAGUGUCUGCUGUUGUUGGAAACAACAAUAAACAAAAAGAAAUAUGAAUGGCAAGGCAAAUGUAACAAAAUGUUAAGAAAACUGAAGAAAACAAAAAGCGAAGUCA .......(((..(((((((((((((((....)))))))........(....)......))).)))))..)))........................................... ( -18.90) >consensus CCCACUCACAAGUGUCUGCUGUUGUUGGAAACAACAAUAAGCAAUAAGAAAUAUGAAUGGCAAAGCAAAUGUAACAAAAUGUUGAGAAAACUAAGGAAAACACAAAA__AAGACA ...........((((.(((((((((((....))))))).))))......(((((.....(((.......)))......)))))................))))............ (-15.87 = -16.53 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:21 2006