| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,575,458 – 12,575,560 |
| Length | 102 |
| Max. P | 0.681529 |
| Location | 12,575,458 – 12,575,560 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.84 |
| Mean single sequence MFE | -20.03 |
| Consensus MFE | -11.99 |
| Energy contribution | -11.00 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12575458 102 - 22224390 GAAAGAAAAUGGAUAGAAAU----AAGCUAUCGCGGUUUUUGUGCCG-AUUUCCAAGGAAAUGCAAAUA-AAAUGAAA---AAUGCAAUUGCA---------AUUCAAAAUAAGUUAAGG ....((((.(((((((((((----..((....)).)))))))).)))-.))))....(((.(((((...-..((....---.))....)))))---------.))).............. ( -16.50) >DroEre_CAF1 43324 114 - 1 GAAUGAAAAUUGAUUGAAAUUAAGAAGAUAUCGCGUUAUUUGUGCCGCAUUUUCAAGGAAGUGCAAAUGCAAAUGAAA---AAUGCAAUUGCAA-UUG--AAAUUAAAAAAAAGUUAAGG .........(..((((.((((..((.....))(((((.(((.(((.(((((((....)))))))....)))...))).---))))))))).)))-)..--)................... ( -18.90) >DroYak_CAF1 32154 116 - 1 GCAAGAAAAUUGAUAGAAAUCCA---GCUAUCGCGUUAUUUGUGCCGCUUUUCCAAGGAAAAGCAAAUG-AAAUGCAAAAAUAUGCAAUUGCAUAUUAAUAAAUUAAAGAAAAGUUAAGG ...........(((((.......---.)))))(((((..(..(...(((((((....)))))))..)..-))))))...(((((((....)))))))....................... ( -24.70) >consensus GAAAGAAAAUUGAUAGAAAU__A_AAGCUAUCGCGUUAUUUGUGCCGCAUUUCCAAGGAAAUGCAAAUG_AAAUGAAA___AAUGCAAUUGCA__UU___AAAUUAAAAAAAAGUUAAGG .........(((((.................((((.....))))..(((((((....)))))))...................(((....))).........)))))............. (-11.99 = -11.00 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:20 2006