Locus 4838

Sequence ID X_DroMel_CAF1
Location 12,568,136 – 12,568,231
Length 95
Max. P 0.971526
window7906

overview

Window 6

Location 12,568,136 – 12,568,231
Length 95
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 76.04
Mean single sequence MFE -22.89
Consensus MFE -10.26
Energy contribution -11.13
Covariance contribution 0.87
Combinations/Pair 1.21
Mean z-score -2.62
Structure conservation index 0.45
SVM decision value 1.68
SVM RNA-class probability 0.971526
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12568136 95 + 22224390
UUUAUUUAGUUAGUU--UUGCAAUUUUGCAACUGUGUUUGCUUUUAAUGAAAGCAAUUAAACUGCACGGCAGCAAAUAAAUAAAACAAA------------GC--GGAGAA
............(((--(((....(((((..((((((((((((((...)))))))).......))))))..)))))....))))))...------------..--...... ( -21.11)
>DroVir_CAF1 38133 104 + 1
----UGUUGUUGGUCAGCAACAUUUUUGUU---GUUGUAAUGUUUAAUGAAAGCAAUUAAACUGCACAGCCACAAAUAAAUAAAAACAAUAACAAUUAACAGCUGGCAAAA
----........((((((.......(((((---(((((...(((((((.......))))))).((...))...............))))))))))......)))))).... ( -22.12)
>DroSec_CAF1 31837 95 + 1
UUUAUUAAGUUAGUU--UUGCAAUUUUGCAACUGUGUUUGCUUUUAAUGAAAGCAAUUAAACUGCACGGCAGCAAAUAAAUAAAACAAA------------GC--GGAGAA
............(((--(((....(((((..((((((((((((((...)))))))).......))))))..)))))....))))))...------------..--...... ( -21.11)
>DroEre_CAF1 35537 95 + 1
UUUAUUUUGUUAGUU--UUGCAAUUUUGCAACUGUGUUUGCUUUUAAUGAAAGCAAUUAAACUGCACGGCAGCAAAUAAAUAAAACAAA------------GC--GCAGAA
....((((((..(((--(((....(((((..((((((((((((((...)))))))).......))))))..)))))....))))))...------------..--)))))) ( -22.01)
>DroYak_CAF1 24266 95 + 1
UUUAUUUUGUUAGUU--UUGCAAUUUUGCAACUGUGUUUGCUUUUAAUGAAAGCAAUUAAACUGCACGGCUGCAAAUAAAGAAAACAAA------------GC--GGAGAA
((..(((((((..((--(((....((((((.((((((((((((((...)))))))).......)))))).)))))))))))..))))))------------).--.))... ( -25.21)
>DroMoj_CAF1 37436 107 + 1
----UGUUGUUGGUCAGCAACAUUUUUGUUAUUGUUGUUGCGUUUAAUGAAAGCAAUUAAACUGCACAGCCACAAAUAAAUAAAAACAAUAACAAUUAACAGCUGGCAGGC
----....((..((((((.......(((((((((((..((((((((((.......))))))).)))..................)))))))))))......))))))..)) ( -25.77)
>consensus
UUUAUUUUGUUAGUU__UUGCAAUUUUGCAACUGUGUUUGCUUUUAAUGAAAGCAAUUAAACUGCACGGCAGCAAAUAAAUAAAACAAA____________GC__GCAGAA
........................(((((..((((((((((((((...)))))))).......))))))..)))))................................... (-10.26 = -11.13 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:15 2006