| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,556,469 – 12,556,579 |
| Length | 110 |
| Max. P | 0.755643 |
| Location | 12,556,469 – 12,556,579 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 80.92 |
| Mean single sequence MFE | -28.57 |
| Consensus MFE | -15.14 |
| Energy contribution | -17.37 |
| Covariance contribution | 2.23 |
| Combinations/Pair | 1.14 |
| Mean z-score | -3.01 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.755643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12556469 110 + 22224390 ACUCUUGAAGUUCUGGGAAUAAAUAUACAUAUGUACAUAU------GUAUGUUUAUCUUUAUUUAUUGUGUGUAAGCACAACACAUCCCACUAACUUGCCAAUUUUCACACGAGGU .(((.(((((((.(((((((((((((((((((....))))------)))))))))).........((((((....))))))....)))))..)))))...........)).))).. ( -28.90) >DroSim_CAF1 18477 114 + 1 ACUCUUAAAGUUCUGGGAAUAAAUAUACAUAUGUACAUAUGUUUAUGUAUGUUUAUCUGUAUUUAUUGUGUGUAAG--CAACGCAUCCCACUAACUUGCGAAUUUUCACACGAGGU .(((...(((((.((((((((((((((((((...((....)).)))))))))))))..........(((((.....--..))))))))))..)))))(.((....)).)..))).. ( -27.70) >DroYak_CAF1 12033 114 + 1 ACUGCAAAAGUUCUGGGAAUUAAUAAACAUAUGUAGAUACAUAUGUACAUAUGUGUGUACAUACAUUGUGUGUGAA--CAAGGCAUCCCACUAACUUGCGAAUUUUCACACGAGGU ..((((..((((.(((((...........((((((.((((((((....)))))))).))))))...(((.((....--))..))))))))..))))))))................ ( -29.10) >consensus ACUCUUAAAGUUCUGGGAAUAAAUAUACAUAUGUACAUAU_U_U_UGUAUGUUUAUCUAUAUUUAUUGUGUGUAAG__CAACGCAUCCCACUAACUUGCGAAUUUUCACACGAGGU .......(((((.((((((((((((((((((............)))))))))))))..........(((((.........))))))))))..)))))................... (-15.14 = -17.37 + 2.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:14 2006