| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,553,848 – 12,553,945 |
| Length | 97 |
| Max. P | 0.639141 |
| Location | 12,553,848 – 12,553,945 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 88.60 |
| Mean single sequence MFE | -27.40 |
| Consensus MFE | -23.74 |
| Energy contribution | -23.63 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.639141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12553848 97 - 22224390 AUCUCGCUCCAGCAGCUGGGCAAAGUUUAGCGCCUAAAAGCAGGCAACAGAAAUGAAAAGCAUGUGGUUGGCGCAAAA---AGCG-UGGGAAAUAUA----UGAU .((((((.((((...))))((....(((.(((((.((..(((.((..((....))....)).)))..))))))).)))---.)))-)))))......----.... ( -28.20) >DroSec_CAF1 17846 105 - 1 AUCUCGCUCCAGCAGCUGGGCAAAGUUUAGCGCCUAAAAGCAGGCAACAGAAAUGAAAAGCAUGUGGUUGGCGCAAAAGAAGGCGUUGGGAAAUAUAGGCAUGUU .....((((((((.(((((((...)))))))((((....((.(.((((....(((.....)))...)))).)))......)))))))))........)))..... ( -28.00) >DroEre_CAF1 18795 95 - 1 AUCUCGCUCUAGCAGCUGUGUAAAGUUUAGCGCCUAAAAGCAGGCAACAGAAAUGAAAAGCAUGUGGUUGGCGCAAAC---ACCG-UGGGAAAUA------UGGU .((((((....(((....)))...((((.(((((.((..(((.((..((....))....)).)))..)))))))))))---...)-)))))....------.... ( -26.00) >consensus AUCUCGCUCCAGCAGCUGGGCAAAGUUUAGCGCCUAAAAGCAGGCAACAGAAAUGAAAAGCAUGUGGUUGGCGCAAAA___AGCG_UGGGAAAUAUA____UGAU .((((((.((((...))))))........(((((.((..(((.((..((....))....)).)))..))))))).............)))).............. (-23.74 = -23.63 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:09 2006