Locus 483

Sequence ID X_DroMel_CAF1
Location 1,408,529 – 1,408,624
Length 95
Max. P 0.588536
window745

overview

Window 5

Location 1,408,529 – 1,408,624
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 64.05
Mean single sequence MFE -25.12
Consensus MFE -12.55
Energy contribution -12.17
Covariance contribution -0.39
Combinations/Pair 1.54
Mean z-score -1.32
Structure conservation index 0.50
SVM decision value 0.11
SVM RNA-class probability 0.588536
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1408529 95 - 22224390
CGGAUCCACAAGCAUGUCGACAUCCAGUGGAAGCCACUGGAGCUGACCGACAUCGCUGGCUUCCGCAACGCCGUGUAGAAACACAAUGAGGCCCA
((((..(...(((((((((...((((((((...))))))))......)))))).))).)..))))....(((((((....)))).....)))... ( -34.00)
>DroVir_CAF1 443 88 - 1
AAAACCAAUCACAGCGUAGAUUUAUGGUGGAAGCCGCUUAAGCUCAGCGACACGGCUGGUUUCCAGACAAUAACAUAGAUAGUUGAA---G----
...........((((....(((((((.((((((((((....))..(((......)))))))))))........))))))).))))..---.---- ( -22.90)
>DroGri_CAF1 15 83 - 1
AAAACCCAUCACAGUAUAGAUUUAUGGUGGAAGCCACUUCAGCUCAGCGACACCGCUGGUUUCCAGACGAUAACAUAAGUAAA------------
...................(((((((((((...))))...(((.(((((....))))))))............)))))))...------------ ( -16.70)
>DroSec_CAF1 14003 95 - 1
CGGAUCCACAAGCAUGUCGACAUCCAGUGGAAGCCACUAGAGCUGACCGACAUCGCUGGCUUCCGCAACGCCGUGUAGAAACACAACGAGGCCCA
.(((..(...(((((((((...((.(((((...))))).))......)))))).))).)..)))((..((..((((....))))..))..))... ( -28.30)
>DroEre_CAF1 10332 95 - 1
CGGGUCCACAAGCAUGUCGACAUCCAGUGGAAGCCACUGGAGCUCACCGACAUCGCUGGCUUCCGCAACGCAGUGUAGGAACACAACGACGCCCA
.((((.....(((((((((...((((((((...))))))))......)))))).))).((....))..((..((((....))))..))..)))). ( -34.00)
>DroMoj_CAF1 13 82 - 1
AAAACUCAUCACAGCGUAGAUUUAUGGUGGAAGCCACUCGAACUGAAGGAUACGGCGGGUUUCCAGACAAUAACAUAGAUAC-------------
...................(((((((.((((((((..(((............)))..))))))))........)))))))..------------- ( -14.80)
>consensus
AAAACCCACAACAAUGUAGACAUACAGUGGAAGCCACUGGAGCUCACCGACACCGCUGGCUUCCACAACACAACAUAGAAACACAA____G____
...........................(((((((((.(((.(........).))).))))))))).............................. (-12.55 = -12.17 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:41 2006