Locus 4829

Sequence ID X_DroMel_CAF1
Location 12,541,237 – 12,541,345
Length 108
Max. P 0.680144
window7890

overview

Window 0

Location 12,541,237 – 12,541,345
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 69.06
Mean single sequence MFE -42.74
Consensus MFE -24.59
Energy contribution -25.80
Covariance contribution 1.21
Combinations/Pair 1.26
Mean z-score -1.51
Structure conservation index 0.58
SVM decision value 0.30
SVM RNA-class probability 0.680144
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12541237 108 - 22224390
GUCGUAGUGGCUGAUAUUAUGGUGGCAACA------GACAC------GGGUAUGGGUGUUGGUGGCUUCACAUCCAAACGUUCGAUAUUCAUGCUGCCGGCACUGCUGGCGGCCAGAGAA
(((((.((.(((........))).)).)).------)))..------(((((((..((((((((......)).)).))))..).))))))..(((((((((...)))))))))....... ( -37.00)
>DroPse_CAF1 50176 90 - 1
GGGGUCGGUGUG---AG---------------------------UGUGGGUGUGGGGGUGGGCGGUUUGGCGUCCAGGCGCUCGAUGUUAAGGCUGCCCGCACUGCUGCUGGCCAGUGAA
..((((((((..---((---------------------------(((((((((.((.(((((((.(((((...)))))))))).)).))...)).)))))))))..))))))))...... ( -38.30)
>DroSec_CAF1 5300 105 - 1
GGCGUAGUGGCG---AUUAUGGUGGCAGCA------GCCAC------UGGUACGGGUGUUGGUGGCUUCACAUCCAAGCGCUCGAUGUUCAGGCUGCCGGCACUGCUGCCGGCCAGAGAA
.......((((.---.....((((((....------)))))------)((((..((((((((..((((.(((((.........)))))..))))..))))))))..)))).))))..... ( -45.40)
>DroEre_CAF1 5972 117 - 1
GGCGCAGUGGUU---AUGACGGUGGCAGCAGCAGCAGCCACUUGUGGUGGUUUGGGUGUGGGAGGCUUCGCAUCCAAGCGCUCGAUGUUCAGGCUGCCGGCACUGCUGCCGGCCAGAGAA
(((((((..((.---....(((..((.(((..(((.((((....)))).(((((((((((((....))))))))))))))))...)))....))..)))..))..))))..)))...... ( -53.20)
>DroPer_CAF1 49269 96 - 1
GGGGUCGGUGUG---AGUGUGA---------------------GUGUGGGUGUGGGUGUGGGCGGUUUUGCGUCCAGGCGCUCGAUGUUAAGGCUGCCCGCACUGCUGCUGGCCAGUGAA
..(((((((...---(((...(---------------------((((((((....((.((((((......)))))).))((.(........))).)))))))))))))))))))...... ( -39.80)
>consensus
GGCGUAGUGGUG___AUUAUGGUGGCA_CA______G_CAC___UG_GGGUAUGGGUGUGGGCGGCUUCGCAUCCAAGCGCUCGAUGUUCAGGCUGCCGGCACUGCUGCCGGCCAGAGAA
.......((((..........(((((..........))))).......((((..(((((((((((((..(((((.........)))))...)))))))))))))..)))).))))..... (-24.59 = -25.80 +   1.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:01 2006