Locus 4828

Sequence ID X_DroMel_CAF1
Location 12,538,006 – 12,538,101
Length 95
Max. P 0.662785
window7889

overview

Window 9

Location 12,538,006 – 12,538,101
Length 95
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 84.83
Mean single sequence MFE -36.77
Consensus MFE -28.82
Energy contribution -30.32
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.78
SVM decision value 0.27
SVM RNA-class probability 0.662785
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12538006 95 + 22224390
UUUAUUCAAAAAGUUGGCCUCGGCCAGCGUC----------------UGACUCCUGCAGAUAUCCUUGCAGCCUCGCAGGACUCGCGCG--------CCACACUUUUGGUGUAAUUGCA
............((((((....))))))...----------------.((.((((((((.............)).)))))).))(((((--------(((......))))))....)). ( -29.82)
>DroSec_CAF1 2124 116 + 1
UUUAUUCAAAAAGUUGGCCUCGGCCAGCGUCUGGUGGCCGCAUCCUCUGACUCCUGCAGAUAUCC-UGCAGCCUCGCAGGACUCG--CGCUGCUGUCCCACACUUUUGGUGUAAUUGCA
............((((((....))))))....((..((((..((((.(((...((((((.....)-)))))..))).))))..))--.))..)).....((((.....))))....... ( -39.40)
>DroSim_CAF1 2470 118 + 1
UUUAUUCAAAAAGUUGGCCUCGGCCAGCGUCUGGUGGCCGCAUCCUCUGACUCCUGCAGAUAUCC-UGCAGCCUCGCAGGACUCGCGCGCUGCUGUCCCACACUUUUGGUGUAAUUGCA
............((((((....))))))....((..(((((.((((.(((...((((((.....)-)))))..))).))))...))).))..)).....((((.....))))....... ( -41.10)
>consensus
UUUAUUCAAAAAGUUGGCCUCGGCCAGCGUCUGGUGGCCGCAUCCUCUGACUCCUGCAGAUAUCC_UGCAGCCUCGCAGGACUCGCGCGCUGCUGUCCCACACUUUUGGUGUAAUUGCA
.((((((((((.((((((....))))))((.(((.(((.(((.....(((.((((((((.............)).)))))).))).....))).)))))).)))))))).))))..... (-28.82 = -30.32 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:00 2006