Locus 4827

Sequence ID X_DroMel_CAF1
Location 12,536,893 – 12,536,992
Length 99
Max. P 0.780526
window7888

overview

Window 8

Location 12,536,893 – 12,536,992
Length 99
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 75.00
Mean single sequence MFE -24.77
Consensus MFE -12.65
Energy contribution -12.43
Covariance contribution -0.21
Combinations/Pair 1.20
Mean z-score -2.36
Structure conservation index 0.51
SVM decision value 0.56
SVM RNA-class probability 0.780526
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12536893 99 - 22224390
ACACACACAUACCUUUAUGCC-CCGCUUGUGAGGAGAGGGAG-----------UGAGUCAAAAGGGACAAACCUUUUAUGACAAUUAAAACAUAAUUGACGGUCAACAUUA
...(((.((((....)))).(-((.(((.....))).))).)-----------))....((((((......)))))).((((..((((.......))))..))))...... ( -19.10)
>DroPse_CAF1 45829 97 - 1
-----------GCCUCAUCUCUUUUCAUGUGUGGAGAGA---GAGAGAGAGAAAGAGUCAAAAGGGACAAACCUUUUAUGACAAUUAAAACAUAAUUGACGGUCAACAUUA
-----------..(((.((((((((((....))))))))---)))))...((..(.((((((((((.....)))))).))))(((((.....)))))..)..))....... ( -24.90)
>DroSec_CAF1 818 94 - 1
-----CACAUACCGUUAUCCC-CCGCUUGUGAGGAGGGGGAG-----------UGAGUCAAAAGGGACAAACCUUUUAUGACAAUUAAAACAUAAUUGACGGUCAACAUUA
-----.....(((((((((((-((.((.....)).)))))).-----------...((((((((((.....)))))).))))..............)))))))........ ( -30.30)
>consensus
_____CACAUACCCUUAUCCC_CCGCUUGUGAGGAGAGGGAG___________UGAGUCAAAAGGGACAAACCUUUUAUGACAAUUAAAACAUAAUUGACGGUCAACAUUA
.................((((.((........)).))))....................((((((......)))))).((((..((((.......))))..))))...... (-12.65 = -12.43 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:59 2006