Locus 4826

Sequence ID X_DroMel_CAF1
Location 12,526,640 – 12,526,735
Length 95
Max. P 0.500000
window7887

overview

Window 7

Location 12,526,640 – 12,526,735
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 81.98
Mean single sequence MFE -36.44
Consensus MFE -26.35
Energy contribution -26.80
Covariance contribution 0.45
Combinations/Pair 1.12
Mean z-score -1.52
Structure conservation index 0.72
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12526640 95 - 22224390
AGCAGAAGGGUUCGUCUGGACGAGGUGGUGAUCAGGGUACACCACUGAUUAUCACACCAACCCGAAUGAGCAGCAAGUCGGGAUCGGGCGGUGCG
.(((.......((((((((..(..(((((((((((((....)).)))))))))))..)..(((((.((.....))..))))).))))))))))). ( -37.71)
>DroSec_CAF1 56253 93 - 1
--CAAAAGGGAUCAUCUGCACGAGGUGGAGAUCAGGGAACACCACUGAUCAUCACACCGACCCGAAUGAGCAGCAAGGCGGGAUCGGGCGGGGGC
--............(((((.....(((..((((((((....)).))))))..))).((((((((..(........)..)))).)))))))))... ( -34.60)
>DroEre_CAF1 56359 93 - 1
--CAGAAGGGUUCGAUGGCGCGCGGUGGCGACCAGGGAACGCCACUGAUUAUCACGCCGACCCGAAUGGGCAGCAAGGCGGGAGCGGGCGUGGCC
--(((..((((((..((((((......))).)))..)))).)).)))....((((((((.(((....))))......((....)).))))))).. ( -37.00)
>consensus
__CAGAAGGGUUCGUCUGCACGAGGUGGAGAUCAGGGAACACCACUGAUUAUCACACCGACCCGAAUGAGCAGCAAGGCGGGAUCGGGCGGGGCC
...............((((.(((((((..((((((((....)).))))))....))))..((((..((.....))...)))).))).)))).... (-26.35 = -26.80 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:58 2006