| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,519,398 – 12,519,498 |
| Length | 100 |
| Max. P | 0.703880 |
| Location | 12,519,398 – 12,519,498 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 95.85 |
| Mean single sequence MFE | -17.15 |
| Consensus MFE | -15.77 |
| Energy contribution | -16.03 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.703880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12519398 100 - 22224390 ACUACUUUACUGUUUAAUUCGUUUUUUUAAACUUAUUUU--UUUUACACGCAAACGCGAAACAAACGUGGGGAAACCAAUUGAAAAACGUGAAAACAAAAAA ..........(((((....((((((((............--.......(((....)))...........((....))....))))))))...)))))..... ( -16.60) >DroSec_CAF1 48941 98 - 1 ACUACUUUACUGUUUAAUUCGUUUUUUUAAACUUAUUUU-UUUUUACACGCAAACGCGAAACAAACGUGGGGCAACCAAUUGAAAAACGUGAAAACAAA--- ..........(((((....((((((((............-........(((....)))...........((....))....))))))))...)))))..--- ( -16.10) >DroEre_CAF1 49389 97 - 1 ACUACUUUACUGUUUAAUUCGUUUUUUUAAACUUAUUU---UUUUACACGCAAACGCGAAACAAACGUGGGGAAACCAAUUGAAAAACGUGAAAACAAAA-- ..........(((((....((((((((...........---.......(((....)))...........((....))....))))))))...)))))...-- ( -16.60) >DroYak_CAF1 49188 99 - 1 ACUACUUUACUGUUUAAUUCGUUU-UUUAAACUUAUUUUUUUUUUACACGCAAACGCGAAACAAACGUGGGGAAACCAAUUGAAAAACGUGAAAACAAAA-- ..........(((((....(((((-(((((..................(((....)))...........((....))..))))))))))...)))))...-- ( -19.30) >consensus ACUACUUUACUGUUUAAUUCGUUUUUUUAAACUUAUUUU__UUUUACACGCAAACGCGAAACAAACGUGGGGAAACCAAUUGAAAAACGUGAAAACAAAA__ ..........(((((....((((((((.....................(((....)))...........((....))....))))))))...)))))..... (-15.77 = -16.03 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:49 2006