| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,518,582 – 12,518,678 |
| Length | 96 |
| Max. P | 0.813873 |
| Location | 12,518,582 – 12,518,678 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 87.77 |
| Mean single sequence MFE | -16.18 |
| Consensus MFE | -13.65 |
| Energy contribution | -13.40 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.813873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12518582 96 - 22224390 CAAAA---ACGUCGGCUGAAUGGAUGUAAAACAAAACAAUGUGUAUGCACAAGGCGUGCCCUGAAAAUGAUUUAAGCAAAUCACAUUAAAAAAAAAAAA .....---(((((.(.....).)))))..........(((((((((((.....)))))).........(((((....))))))))))............ ( -14.10) >DroSec_CAF1 48144 87 - 1 CAAAA---ACGUCGGCUGAAUGGAUGUAAAACAAAACAAUGUGUAUGCACAAGGCGUGCCCUGAAAAUGAUUUAAGCAAAUCACAUAAAA--------- .....---(((((.(.....).)))))...........((((((((((.....)))))).........(((((....)))))))))....--------- ( -13.20) >DroEre_CAF1 48550 89 - 1 CAAAGAGCACGCCAGCUGAAUGGAUGUAAAACAAAACAAUGUGUAUGCACAAGGCGUGCCCUGAAAAUGAUUUAAGCAAAUCAAAU---CAC------- ...((.(((((((...........(((........))).((((....)))).))))))).)).....((((((....))))))...---...------- ( -22.50) >DroYak_CAF1 48344 89 - 1 CAAAA---ACGCCGGCUGAAUGGAUGUAAAACAAAACAAUGUGUAUGCACAAGGCGUGCCCUAAAAAUGAUUUAAGCAAAUCACAUAAACAA------- .....---(((((...........(((........))).((((....)))).)))))..........((((((....)))))).........------- ( -14.90) >consensus CAAAA___ACGCCGGCUGAAUGGAUGUAAAACAAAACAAUGUGUAUGCACAAGGCGUGCCCUGAAAAUGAUUUAAGCAAAUCACAUAAAAAA_______ ........(((((...........(((........))).((((....)))).)))))..........((((((....))))))................ (-13.65 = -13.40 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:48 2006