Locus 4818

Sequence ID X_DroMel_CAF1
Location 12,513,084 – 12,513,179
Length 95
Max. P 0.796464
window7875

overview

Window 5

Location 12,513,084 – 12,513,179
Length 95
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 93.37
Mean single sequence MFE -34.72
Consensus MFE -33.26
Energy contribution -32.98
Covariance contribution -0.28
Combinations/Pair 1.14
Mean z-score -1.18
Structure conservation index 0.96
SVM decision value 0.60
SVM RNA-class probability 0.796464
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12513084 95 + 22224390
AUGCAGCAGGAGGAUACGCCCAGGUUGCCGGUUUUCAACCGUCUCAGCUCCGGUGUGGAGGCCUACCAGCAGCAGUCCAAUUUGGGACUCUAAAC----
.(((.((.(((((.((((((..(((((.((((.....))))...)))))..))))))....))).)).)).)))((((......)))).......---- ( -33.90)
>DroSec_CAF1 42255 95 + 1
AUGCAGCAGGAGGAUACGCCCAGGUUGCCGGUUUUCAACCGUCUUAGCUCCGGUGUGGAGGCCUACCAGCAGCAGUCCAAUUUGGGACUCUAAGC----
.(((.((.(((((.((((((..(((((.((((.....))))...)))))..))))))....))).)).)).)))((((......)))).......---- ( -32.10)
>DroSim_CAF1 39745 95 + 1
AUGCAGCAGGAGGAUACGCCCAGGUUGCCGGUUUUCAACCGUCUCAGCUCCGGUGUGGAGGCCUACCAUCAGCAGUCCAAUUUGGGACUCUAAGC----
.....((.(((((.((((((..(((((.((((.....))))...)))))..))))))....))).))...((.(((((......)))))))..))---- ( -31.30)
>DroEre_CAF1 43674 94 + 1
AUGCAGCAGGAGGAUACGCCCAGGCUGCCGGUAUUCAACCGUCUCAGCUCCGGCGUGGAGGCCUACCAGCAGCAGUCCAACUUGGGACUCUAAG-----
.(((.((.(((((.((((((..(((((.((((.....))))...)))))..))))))....))).)).)).)))((((......))))......----- ( -38.40)
>DroYak_CAF1 38128 99 + 1
AUGCAGCAGGAGGAUACGCCCAGGCUGCCGGUAUUCAAUCGUCUCAGCUCCGGAGUGGAGGCCUACCAGCAGCAGUCCAACUUGGGACUCUAAGGGCGA
................(((((..(((((.((((.......(((((.(((....))).))))).)))).)))))(((((......)))))....))))). ( -37.90)
>consensus
AUGCAGCAGGAGGAUACGCCCAGGUUGCCGGUUUUCAACCGUCUCAGCUCCGGUGUGGAGGCCUACCAGCAGCAGUCCAAUUUGGGACUCUAAGC____
.(((.((.(((((.((((((..(((((.((((.....))))...)))))..))))))....))).)).)).)))((((......))))........... (-33.26 = -32.98 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:47 2006