Locus 4816

Sequence ID X_DroMel_CAF1
Location 12,508,495 – 12,508,585
Length 90
Max. P 0.885596
window7873

overview

Window 3

Location 12,508,495 – 12,508,585
Length 90
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 96.04
Mean single sequence MFE -22.86
Consensus MFE -19.50
Energy contribution -20.34
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.66
Structure conservation index 0.85
SVM decision value 0.94
SVM RNA-class probability 0.885596
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12508495 90 + 22224390
CCCACAAAUCGAGUUUAUGCGAUUGGCUCUUUGCGAAAUCAGUUCACGAAUCGGAGUCAUAACUUGACCAUGAAUUCGAC--CCGACGUCGU
........((((((((((((((.((((((((((.(((.....))).)))...)))))))....)))..))))))))))).--.......... ( -21.40)
>DroSec_CAF1 37763 90 + 1
CCCACAAAUCGAGUUUAUGCGAUUCGCUCUUUGCGAAAUCAGUUCACGAAUCGGAGUCAUAACUUGACCAUGAAUUCGAC--CCGACGUCGU
........(((((((((((((((((((.....))(((.....)))..))))))..((((.....))))))))))))))).--.......... ( -25.10)
>DroSim_CAF1 35076 90 + 1
CCCACAAAUCGAGUUUAUGCGAUUCGCUCUUUGCGAAAUCAGUUCACGAAUCGGAGUCAUAACUUGACCAUGAAUUCGAC--CCGACGUCGU
........(((((((((((((((((((.....))(((.....)))..))))))..((((.....))))))))))))))).--.......... ( -25.10)
>DroEre_CAF1 38904 90 + 1
CCCACAAAUCGAGUUUAUGCGAUCCGCUCUUUGUGAAAUCAGUUCACGAAUCGGAGUCAUAACUUGACCAUGAAUUCAAC--CCGACGUCGU
..........(((((((((...((((...((((((((.....)))))))).))))((((.....)))))))))))))...--.......... ( -23.30)
>DroYak_CAF1 33371 92 + 1
ACCACAAAUCGAGUUUAUGCGAUCCGCUCUUUGCGAAAUCAGUUCACGAAUCGGAGUCAUAACUUGACCAUGAAUUCAAACACCGACGUCGU
..........(((((((((...((((...((((.(((.....))).)))).))))((((.....)))))))))))))............... ( -19.40)
>consensus
CCCACAAAUCGAGUUUAUGCGAUUCGCUCUUUGCGAAAUCAGUUCACGAAUCGGAGUCAUAACUUGACCAUGAAUUCGAC__CCGACGUCGU
........(((((((((((((((((((.....))(((.....)))..))))))..((((.....)))))))))))))))............. (-19.50 = -20.34 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:45 2006