| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,504,248 – 12,504,354 |
| Length | 106 |
| Max. P | 0.999188 |
| Location | 12,504,248 – 12,504,354 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.34 |
| Mean single sequence MFE | -22.72 |
| Consensus MFE | -9.87 |
| Energy contribution | -10.55 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.95 |
| Structure conservation index | 0.43 |
| SVM decision value | 3.42 |
| SVM RNA-class probability | 0.999188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12504248 106 + 22224390 UUAAAAGAAAUCGAAUAGGCAA--AUUUCGUCUAUGCCAUGGUUUUUAUCCAUCGAGA-CCAGUAUCUACUGUACUUCUCUUGGAUUUUUUUUUCAAAACUAUGC-----------UUUU ..(((((.......((((((..--.....))))))..(((((((((.(((((..((((-..(((((.....))))))))).))))).........))))))))))-----------)))) ( -22.40) >DroSec_CAF1 33605 106 + 1 UUAAAUGAAAUCGAAUAAGCAC--AUUUCGUUUAUAACAUGGUUUUUAUCCAACGAGA-CCAGUAUUCACUGUACUUCUCUUGGAUUUUUUUUUCAAAACUAUGU-----------UUUU .((((((((((.(........)--)))))))))).(((((((((((.((((((.((((-..(((((.....))))))))))))))).........))))))))))-----------)... ( -26.60) >DroSim_CAF1 30603 106 + 1 UUAAAUGAAAUCGAAUAAGCAC--AUUUCGUUUAUAACAUGGUUUUUAUCCAACGAGA-CCAGUAUUCACUGUACUUCUCUUGGAUUUUUUUUUCAAAACUAUGU-----------UUUU .((((((((((.(........)--)))))))))).(((((((((((.((((((.((((-..(((((.....))))))))))))))).........))))))))))-----------)... ( -26.60) >DroEre_CAF1 34957 111 + 1 UCAACAUAAAACUAAUAAACA----UUUCGU-UACCGCAUGGUAUUUGUGUAACAUGA-CCAGUAUUCACUGUACUUCUCUUGAUUUU---UUUCAAAGCUACAUACAUACACAUGUUUU .....................----......-....(((((((((.((((((.(..((-..(((((.....)))))..))((((....---..)))).).)))))).)))).)))))... ( -19.10) >DroYak_CAF1 29369 108 + 1 UCAAUAGUAAACAGAUAAACAGAUAUUGCGUUUAUGGCAUGUUCAUUAUCUAAUAUGCCCCAGUAUUCACUGUACUUCUCGUGAAUUUCG-UUCAAAAGCUAUGU-----------UUUU ...(((((..((((((((((.........))))))((((((((........))))))))..........))))........(((((...)-))))...)))))..-----------.... ( -18.90) >consensus UUAAAAGAAAUCGAAUAAGCAC__AUUUCGUUUAUAACAUGGUUUUUAUCCAACGAGA_CCAGUAUUCACUGUACUUCUCUUGGAUUUUUUUUUCAAAACUAUGU___________UUUU ..............((((((.........)))))).((((((((((.......(((((...(((((.....)))))..)))))............))))))))))............... ( -9.87 = -10.55 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:45 2006