Locus 4813

Sequence ID X_DroMel_CAF1
Location 12,500,835 – 12,500,936
Length 101
Max. P 0.611912
window7870

overview

Window 0

Location 12,500,835 – 12,500,936
Length 101
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 82.11
Mean single sequence MFE -25.49
Consensus MFE -10.41
Energy contribution -11.09
Covariance contribution 0.68
Combinations/Pair 1.23
Mean z-score -2.44
Structure conservation index 0.41
SVM decision value 0.16
SVM RNA-class probability 0.611912
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12500835 101 - 22224390
GUCUCCUUAAAUGGGAAGGGAUGAUAUUGCGGUAAAGAUAGCAAAAGAUCAGUAGGUAGUAGUAGUAGAUCUCUACCUUU---UUUUUAUCAUCUCUUUCCGCA
............((((((((((((((((((..........)))).........((((((.((........))))))))..---....))))))))))))))... ( -30.60)
>DroSec_CAF1 30316 89 - 1
GUCGCCUUAAAUGGGAAGGGAUGAUAUUGGGGUAAAGAUAGCAACAGAUCAGUACGUAUU---------UCUCUACCUUU---UUUU---CAUCUCUUUCCGCA
............((((((((((((.(..((((((.(((..((.((......))..))...---------))).)))))).---.).)---)))))))))))... ( -27.10)
>DroSim_CAF1 27272 89 - 1
GUCGCCUUAAAUGGGAAGGGAUGAUAUUGGGGUAAAGAUAGCAACAGAUCAGUACGUAUU---------UCUCUACCUUU---UUUU---CAUCUCUUUCCGCA
............((((((((((((.(..((((((.(((..((.((......))..))...---------))).)))))).---.).)---)))))))))))... ( -27.10)
>DroEre_CAF1 31565 92 - 1
GUCUCCUUAAAUAGGAGGCGAUGAUAAUGCGGUAAAUAUAGCAAAAGAUCAGUAUGUAUU---------UCUCUAACUCUACCUCUU---GAUCUUCUUCCGCA
(((((((.....)))))))........(((((............((((((((...(((..---------..........)))...))---))))))...))))) ( -21.86)
>DroYak_CAF1 25816 90 - 1
GACUG-UUAAAUAGGAAGGGCUGAUAUUGCGGUAAAGAUAGCAAAAGAUCAGUAGGUAUU---------UCUCUACCUUU-CUUUUU---GGUCCCUUUUCGCA
((((.-..(((.(((((((((((((.((((..........))))...))))))(((....---------)))...)))))-)).)))---)))).......... ( -20.80)
>consensus
GUCUCCUUAAAUGGGAAGGGAUGAUAUUGCGGUAAAGAUAGCAAAAGAUCAGUACGUAUU_________UCUCUACCUUU___UUUU___CAUCUCUUUCCGCA
...........((((((((((((..........((((.(((....(((.....................)))))).))))..........)))))))))))).. (-10.41 = -11.09 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:42 2006