Locus 4812

Sequence ID X_DroMel_CAF1
Location 12,500,687 – 12,500,786
Length 99
Max. P 0.619183
window7869

overview

Window 9

Location 12,500,687 – 12,500,786
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.37
Mean single sequence MFE -27.47
Consensus MFE -17.65
Energy contribution -16.93
Covariance contribution -0.72
Combinations/Pair 1.22
Mean z-score -1.54
Structure conservation index 0.64
SVM decision value 0.17
SVM RNA-class probability 0.619183
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12500687 99 + 22224390
CCUUUUCUGCUUCUUGUUCUUUG--UUUUGUUUGUGCGGGUUAUCAAAUAGCCGAUAAAUUAUUGGCGCAGGAAA---AAGGAAUGGG----------------GGGAUACAAAAAGAGA
.(((((...(((((..((((((.--.....(((.(((((....)).....(((((((...)))))))))).))).---))))))..))----------------))).....)))))... ( -26.80)
>DroSec_CAF1 30150 117 + 1
CCUUUUCUGCUUCUUGUUCUUUGUGUUUUGUUUGUGCGGGUUAUCAAAUAGCCGAUAAAUUAUUGGCGCAGGAAA---AAGGAAUGGGAAAAGAGGGAUGGGGGGUGGUACAAAUAGAGA
.((((.(..(((((..((((((..(((((.(((.(((((....)).....(((((((...)))))))))).))).---..))))).......))))))..)))))..).......)))). ( -29.50)
>DroSim_CAF1 27106 117 + 1
CCUUUUCUGCUUCUUGUUCUUUGUGUUUUGUUUGUGCGGGUUAUCAAAUAGCCGAUAAAUUAUUGGCGCAGGAAA---AAGGAAUGGGAAAAGAGGGAUGGGGGGUGGUACAAAUAGAGA
.((((.(..(((((..((((((..(((((.(((.(((((....)).....(((((((...)))))))))).))).---..))))).......))))))..)))))..).......)))). ( -29.50)
>DroEre_CAF1 31402 107 + 1
CAUUUUCUGC---UUGUUCUUUG--UUUUGUUUGUGCGGGUUAUCAAAUAGCCGAUAAAUUAUUGGCGCAGGAAA---AAGGAAUGAGAAAAGAGAGUUGG-----GGUACAAAUAGAGA
.(((((((.(---(..((((((.--.....(((.(((((....)).....(((((((...)))))))))).))).---))))))..))...)))))))...-----.............. ( -26.50)
>DroYak_CAF1 25654 110 + 1
CGUUUUCCGCUUCUUGUUCUUUG--UUUUGUUUGUGCGGGUUAUCAAAUAGCCGAUAAAUUAUUGGCGCAGGAAA---AAGGAAUGAGCAAAGCGAGUUGG-----GGUACAAAUAGAGA
.((.((((((((((((((((((.--((((.(((((((.((((((...))))))((((...)))).))))))).))---)).))).)))).))).))).)))-----)).))......... ( -27.60)
>DroAna_CAF1 38296 98 + 1
CCCUUUUUUUUUUUUCUUCUCUG--UUUUGUUUGUGCGGGUUAUCAAAUAGUCGAUAAAUUAUUGGCAUAGGGAAUGGAAGGAAGGAGAAACUG--------------------UGGAGA
(((..(((((((((((((((...--..((.(((((((.(((((((........))))....))).))))))).)).)))))))))))))))..)--------------------.))... ( -24.90)
>consensus
CCUUUUCUGCUUCUUGUUCUUUG__UUUUGUUUGUGCGGGUUAUCAAAUAGCCGAUAAAUUAUUGGCGCAGGAAA___AAGGAAUGAGAAAAGAG_G_UGG_____GGUACAAAUAGAGA
............((((((((((...((((..((((((.(((((((........))))....))).))))))))))...))))))))))................................ (-17.65 = -16.93 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:41 2006