| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,499,694 – 12,499,787 |
| Length | 93 |
| Max. P | 0.562614 |
| Location | 12,499,694 – 12,499,787 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 82.84 |
| Mean single sequence MFE | -20.73 |
| Consensus MFE | -12.33 |
| Energy contribution | -12.14 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.562614 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12499694 93 - 22224390 GGGAAUAUCGUAUUCUGCGAAUAAUAAUAUGCC-GUGGAUAAU--AAAAUAU---------------UCCACACAUUCCCAGAAUCCGGGAAAAUGUUCAAACUUCAGAUC .(((((((..(((((..((.(((....)))..)-)..))..))--)..))))---------------)))(((..(((((.......)))))..))).............. ( -21.40) >DroSec_CAF1 29184 93 - 1 GGGAAUAUCGUAUUCUGCGAAUAAUAAUAUGCC-GUGGAUAAU--AUAAUAU---------------UCCACACAUUCCCAGAAUCCGGGAAAAGGUUUAAACUUCAGUUC .(((((((..(((((..((.(((....)))..)-)..))..))--)..))))---------------))).....(((((.......)))))................... ( -21.50) >DroEre_CAF1 30376 110 - 1 GGGAAUAUCGUGUUCUACGAAUAACAAUAAGCC-AUGGAUAAUGGAUAAUGUUAAUGUGGAAUGUUAUCCACACAUUCCCAGAAUCCGGGAAAAAAUUAAAACUUCAUAUC ((((((.(((((...))))).(((((.....((-((.....))))....))))).((((((......)))))).))))))............................... ( -24.80) >DroYak_CAF1 24677 94 - 1 GGGAAUAUCGUGUUCUACGAAUAACAAUAAGCCCGUGAAUAAU--AUAAUAU---------------UCCACACAUUUCCAGAAUCCGGGAAAAAAUUUAAACUUCAGAUC .(((((((..((((.((((..............))))...)))--)..))))---------------))).....(((((........))))).................. ( -15.24) >consensus GGGAAUAUCGUAUUCUACGAAUAACAAUAAGCC_GUGGAUAAU__AUAAUAU_______________UCCACACAUUCCCAGAAUCCGGGAAAAAAUUUAAACUUCAGAUC ((((((.(((((...)))))..............(((((............................)))))..))))))............................... (-12.33 = -12.14 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:40 2006