| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,494,418 – 12,494,519 |
| Length | 101 |
| Max. P | 0.933007 |
| Location | 12,494,418 – 12,494,519 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 90.23 |
| Mean single sequence MFE | -14.77 |
| Consensus MFE | -13.69 |
| Energy contribution | -14.13 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12494418 101 + 22224390 UCUCU--CACUUCCAUUAUUCGUCGCUAAUCAAACGCUCUCU----UCACUCUUUUAGCUGAUUUUUUUUUAUUGUUGCAAUGCAAUAUUCGCGGAACGAAUAACAA .....--........(((((((((((.(((((...(((....----..........))))))))......((((((......))))))...)))..))))))))... ( -15.74) >DroSec_CAF1 23892 102 + 1 UCUCUCUCUCUACCAUUAUUCGUCGCUAAUCAAACGCUCUCU----UCACUCUUUUAGCUGAUUUU-UUUUAUUGUUGCAAUGCAAUAUUCGCGGAACGAAUAACAA ...............(((((((((((.(((((...(((....----..........))))))))..-...((((((......))))))...)))..))))))))... ( -15.74) >DroSim_CAF1 25370 100 + 1 UCUCU--CUCUUCCAUUAUUCGUCGCUAAUCAAACGCUCUCU----UCACUCUUUUAGCUGAUUUU-UUUUAUUGUUGCAAUGCAAUAUUCGCGGAACGAAUAACAA .....--........(((((((((((.(((((...(((....----..........))))))))..-...((((((......))))))...)))..))))))))... ( -15.74) >DroEre_CAF1 24740 98 + 1 ----U--CACUACCAUCAUUCGUUGCUAAUCAAACGCUCUCUUCCUUCACUCUUUUAGCUGAUUUU-UUUUAUUGUUGCAAUGCAAUAUUCGCGGAACGAAUAAC-- ----.--..........(((((((.(.(((((...(((..................))))))))..-...((((((......)))))).....).)))))))...-- ( -12.87) >DroYak_CAF1 19399 96 + 1 ----U--UCCUUUCAACAUUCGUCGCUAAUCAAACGCUCUCU----UCACUUUUUUAGCUGAUUUU-UUUUAUUGUUGCAAUGCAAUAUUCGCGGAACGAAUAACAA ----.--..........(((((((((.(((((...(((....----..........))))))))..-...((((((......))))))...)))..))))))..... ( -13.74) >consensus UCUCU__CACUUCCAUUAUUCGUCGCUAAUCAAACGCUCUCU____UCACUCUUUUAGCUGAUUUU_UUUUAUUGUUGCAAUGCAAUAUUCGCGGAACGAAUAACAA ...............(((((((((((.(((((...(((..................))))))))......((((((......))))))...)))..))))))))... (-13.69 = -14.13 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:35 2006