| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,493,776 – 12,493,877 |
| Length | 101 |
| Max. P | 0.547387 |
| Location | 12,493,776 – 12,493,877 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 90.70 |
| Mean single sequence MFE | -28.07 |
| Consensus MFE | -21.10 |
| Energy contribution | -21.77 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12493776 101 + 22224390 AUAAGCAUAAGCAAGCAUUCGAUUAAUUUACAUGCGCGCAUGUGUGCAAUCCCAAGGACUUUGGGAACAAGAAGAACCGCGCGCACAAGGAGCAUGCGAAG ....((....))..............((..(((((.(.(.(((((((..(((((((...)))))))....(......)..))))))).)).)))))..)). ( -26.90) >DroSec_CAF1 23265 99 + 1 AUACGCAUAAGCAAACAUUCGCUAAAUUUACAUGCGCGCAUGUGUGCAGUCCCAAGGACCUCA--UACAAGAAGAACCGCGUGCUCAAGAAGCAUGCGAAG ....((....)).....(((((....(((....((((((.((((((..((((...))))..))--)))).(......)))))))....)))....))))). ( -28.70) >DroSim_CAF1 24719 99 + 1 AUAAGCAUAAGCAAACAUUCGCUAAAUUUACAUGCGCGCAUGUGUGCAGUCCCAAGGACCUCA--UACAAGAAGAACCGCGUGCUCAAGAAGCAUGCGAAG ....((....)).....(((((....(((....((((((.((((((..((((...))))..))--)))).(......)))))))....)))....))))). ( -28.60) >consensus AUAAGCAUAAGCAAACAUUCGCUAAAUUUACAUGCGCGCAUGUGUGCAGUCCCAAGGACCUCA__UACAAGAAGAACCGCGUGCUCAAGAAGCAUGCGAAG ....((....)).....(((............((((((....))))))((((...))))...........)))....(((((((.......)))))))... (-21.10 = -21.77 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:34 2006