Locus 4802

Sequence ID X_DroMel_CAF1
Location 12,486,502 – 12,486,607
Length 105
Max. P 0.708083
window7855

overview

Window 5

Location 12,486,502 – 12,486,607
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 92.00
Mean single sequence MFE -23.10
Consensus MFE -20.32
Energy contribution -20.43
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.45
Structure conservation index 0.88
SVM decision value 0.37
SVM RNA-class probability 0.708083
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12486502 105 + 22224390
CAGAAUAUCAAAAAUAUUUUGCUUUAGUCAUAAAGGUCAUGGAUUGUACAUGGCAUCGCCCACCGAAAUUCAAAAAUUCACGAUAUCAUCGGAAUUUUGGUAAAC---------------
((((((((.....))))))))(((((....)))))((((((.......)))))).......((((((((((.........((((...))))))))))))))....--------------- ( -22.90)
>DroVir_CAF1 21938 120 + 1
CAGAAUAUCAAAAAUAUUUUGCUUUAGUCAUAAAGGUCAUGGAUUGUACAUGGCAUCGCCCACCGAAAUUCAGAAAUUCACGAUAUCAUCGGAAUUUUGGUAAGAUCUCCGGUCCCUCCC
((((((((.....))))))))(((((....)))))((((((.......)))))).......((((((((((.(.....).((((...))))))))))))))..(((.....)))...... ( -25.90)
>DroPse_CAF1 18356 105 + 1
CAGAAUAUCAAAAAUUUUUUGCUUUAGUCAUAAAGGUCAUGGAUUGUACAUGGCAUCGCCCACCGAAAUUCAAAAAUUCACGAUAUCAUCGGAAUUCUGGUAAGC---------------
((((((.((......(((((((((((....)))))((((((.......)))))).(((.....)))....))))))....((((...))))))))))))......--------------- ( -19.70)
>DroMoj_CAF1 20116 108 + 1
CAGAAUAUCAAAAAUCUUUUGCUUUAGUCAUAAAGGUCAUGGAUUGUACAUGGCAUCGCCCACCGAAAUUCAGAAAUUCACGAUAUCAUCGGAAUUUUGGUAAGAGC------------C
....................(((((..........((((((.......)))))).......((((((((((.(.....).((((...)))))))))))))).)))))------------. ( -23.50)
>DroAna_CAF1 20181 105 + 1
CAGAAUAUCAAAAAUAUUUUGCUUUAGUCAUAAAGGUCAUGGAUUGUACAUGGCAUCGCCCACCGAAAUUCAAAAAUUCACGAUAUCAUCGGAAUUUUGGUAGGU---------------
((((((((.....))))))))(((((....)))))((((((.......))))))...(((.((((((((((.........((((...)))))))))))))).)))--------------- ( -26.90)
>DroPer_CAF1 18550 105 + 1
CAGAAUAUCAAAAAUUUUUUGCUUUAGUCAUAAAGGUCAUGGAUUGUACAUGGCAUCGCCCACCGAAAUUCAAAAAUUCACGAUAUCAUCGGAAUUCUGGUAAGC---------------
((((((.((......(((((((((((....)))))((((((.......)))))).(((.....)))....))))))....((((...))))))))))))......--------------- ( -19.70)
>consensus
CAGAAUAUCAAAAAUAUUUUGCUUUAGUCAUAAAGGUCAUGGAUUGUACAUGGCAUCGCCCACCGAAAUUCAAAAAUUCACGAUAUCAUCGGAAUUUUGGUAAGC_______________
..((((.((............(((((....)))))((((((.......))))))..........)).)))).(((((((.((((...)))))))))))...................... (-20.32 = -20.43 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:28 2006