| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,485,977 – 12,486,070 |
| Length | 93 |
| Max. P | 0.866032 |
| Location | 12,485,977 – 12,486,070 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.71 |
| Mean single sequence MFE | -27.75 |
| Consensus MFE | -19.76 |
| Energy contribution | -19.65 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.866032 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12485977 93 + 22224390 AUGUCG---C---CAACCAGUGCUGCAUCAACCGCAUACAAUUAUCGGAAAUGGAUUUUGCAGUCAAGGCAGAAACUAUCACGAUGAAAGGUGACUUUC--------------------- ..((((---(---(.....(((.(((.......))))))..((((((...((((.((((((.......)))))).))))..))))))..))))))....--------------------- ( -27.90) >DroSim_CAF1 16618 101 + 1 AUCUCCAUGCUCAGAGCCAGUGCUGCAUCAACCGCAUACAAUUAUCGGAAAUGGAUUUUGCAGUCAAGGCAGAAACUAUCACGAUGAAAGGUGACUUUGAG------------------- .........(((((((.(((((.(((.......))))))..((((((...((((.((((((.......)))))).))))..))))))....)).)))))))------------------- ( -26.00) >DroEre_CAF1 16213 110 + 1 AUGUCG---C---CAACCAGUGCUGCAUCAACCGCAUACAAUUAUCGGAAAUGGAUUUUGCAGUCAAGGCAGAAACUAUCACGAUGAAAGGUGACU---UGGGGCAUUU-AGCUGGUUGU ......---.---((((((((..(((.....((........((((((...((((.((((((.......)))))).))))..))))))(((....))---))).)))...-.)))))))). ( -34.00) >DroWil_CAF1 28428 91 + 1 AUGUGG---C---AAAUCAAUGUUGCAUCAAUCGCAUACAAUUAUCGGAAAUGGAUUUUGCAGUCAAGGCAGAAACUAUCACGAUGAAAGGUAA----AAG------------------- (((..(---(---(......)))..)))........(((..((((((...((((.((((((.......)))))).))))..))))))...))).----...------------------- ( -21.60) >DroYak_CAF1 11022 114 + 1 AUGUCG---C---CAACCAGUGCUGCAUCAACCGCAUACAAUUAUCGGAAAUGGAUUUUGCAGUCAAGGCAGAAACUAUCACGAUGAAAGGUGACUCUUAGGGGCACUUAAGCUGGUUGU ......---.---((((((((..(((.......))).....((((((...((((.((((((.......)))))).))))..)))))).(((((.(((....))))))))..)))))))). ( -33.60) >DroAna_CAF1 19701 92 + 1 AUGUGG---C---CAACCAGUGCUGCAUCAAUCGCAUACAAUUAUCGGAAAUGGAUUUUGCAGUCAAGGCAGAAACUAUCACGAUGAAAGGUUAUUAU---------------------- ..((((---(---(.....(((.(((.......))))))..((((((...((((.((((((.......)))))).))))..))))))..))))))...---------------------- ( -23.40) >consensus AUGUCG___C___CAACCAGUGCUGCAUCAACCGCAUACAAUUAUCGGAAAUGGAUUUUGCAGUCAAGGCAGAAACUAUCACGAUGAAAGGUGACU_U_AG___________________ ...............(((.(((.(((.......))))))..((((((...((((.((((((.......)))))).))))..))))))..)))............................ (-19.76 = -19.65 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:27 2006