| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,402,211 – 1,402,303 |
| Length | 92 |
| Max. P | 0.886612 |
| Location | 1,402,211 – 1,402,303 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 76.16 |
| Mean single sequence MFE | -27.42 |
| Consensus MFE | -16.39 |
| Energy contribution | -16.17 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886612 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1402211 92 + 22224390 GGUUUGU--GUGCAUCCGAAUUGGG--GGUAAAAUCUUCAGAUUCAGAUAGAUCGAUUUGGGUCUGCCCAUUACCCAACACCCAACACCC-------AACCGC ((((.((--((....((.....))(--(((((......(((((((((((......)))))))))))....))))))........))))..-------)))).. ( -26.50) >DroSec_CAF1 7601 99 + 1 GGUUUGU--GUGCAUCCGAAUUGGG--GGUAAAAUCUUCAGAUUCAGAUAGAUCGAUUUGAGUCUGUCCAACCCCCAACCCCCAACCCCCAACCCCUAACCAC ((((.(.--((.........(((((--(((........(((((((((((......)))))))))))...........))))))))......)).)..)))).. ( -27.97) >DroYak_CAF1 3361 94 + 1 GGUUUGUGUGUGCAUCCGAAUUGGGGCGGUAAAAUCUCGAGAUCCAGAUAGAUCGAUUUGGGUCCCC------CCCCACACACUUCCCCCGC---ACACCCUC ((...(((((((..........((((.((...........(((((((((......))))))))))))------))))))))))..)).....---........ ( -27.80) >consensus GGUUUGU__GUGCAUCCGAAUUGGG__GGUAAAAUCUUCAGAUUCAGAUAGAUCGAUUUGGGUCUGCCCA___CCCAACACCCAACCCCC_______AACCAC ((..(((....))).))...(((((..(((...)))..(((((((((((......))))))))))).......)))))......................... (-16.39 = -16.17 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:37 2006