| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 222,286 – 222,380 |
| Length | 94 |
| Max. P | 0.665714 |
| Location | 222,286 – 222,380 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 69.71 |
| Mean single sequence MFE | -21.82 |
| Consensus MFE | -7.49 |
| Energy contribution | -8.76 |
| Covariance contribution | 1.27 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665714 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 222286 94 - 22224390 GGCAACGACGGCAUGAUUGAUAUGGAUAUGGGCAAG--UACGCGUAAGUAUAUAGUAUAUACGAGUAUAUACAUAUAUGUAUGUGCUAU----AUAUGGG ....(((.((((.((.((.(((....))).)))).)--).)))))..((((((((((((((((.((((....)))).))))))))))))----))))... ( -23.80) >DroVir_CAF1 116220 83 - 1 GGAAACGACGGCAUGAUUGAUAUGAAAGC---CAAG--CAAGCACCAAGGGCUCGAUGAUGCGA-----------AAUGUAGAUGGGACAUGAAAAUGG- (....)....((((.(((((.......((---...)--)..((.(....)))))))).))))..-----------.............(((....))).- ( -15.50) >DroSec_CAF1 17106 92 - 1 GGCAACGACGGCAUGAUUGAUAUCGAUAUGGGCAAG--UACGC--AAGUAUAUAGUAUAUACGAGUAUAUACAUAUAUGUAUGUGCUAU----AUAUGGG .((.((....((...((((....))))....))..)--)..))--..((((((((((((((((.((((....)))).))))))))))))----))))... ( -24.80) >DroSim_CAF1 13992 94 - 1 GGCAACGACGGCAUGAUUGAUAUGGAUAUGGGCAAG--UACGCGUAAGUAUAUAGUAUAUACGAGUAUAUACAUAUAUGUAUGUGCUAU----AUAUGGG ....(((.((((.((.((.(((....))).)))).)--).)))))..((((((((((((((((.((((....)))).))))))))))))----))))... ( -23.80) >DroAna_CAF1 25083 93 - 1 GGCAACGACGGCAUGAUUGAUAUGGAUAUGGAUAUGGAUAUGGCCAAGUACAUACCUCACAUAUAUUUUCUCAUAUAUGGAUGUGG-------AUGUGGA (....)...(((...(((.((((........)))).)))...)))...(((((.((.(((((((((......)))))))..)).))-------))))).. ( -21.20) >consensus GGCAACGACGGCAUGAUUGAUAUGGAUAUGGGCAAG__UACGCGCAAGUAUAUAGUAUAUACGAGUAUAUACAUAUAUGUAUGUGCUAU____AUAUGGG (....).....((((.......................(((......)))..(((((((((((.((((....)))).)))))))))))......)))).. ( -7.49 = -8.76 + 1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:18 2006