Locus 4799

Sequence ID X_DroMel_CAF1
Location 12,483,388 – 12,483,494
Length 106
Max. P 0.691100
window7852

overview

Window 2

Location 12,483,388 – 12,483,494
Length 106
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 92.59
Mean single sequence MFE -29.30
Consensus MFE -25.10
Energy contribution -24.72
Covariance contribution -0.38
Combinations/Pair 1.07
Mean z-score -1.60
Structure conservation index 0.86
SVM decision value 0.33
SVM RNA-class probability 0.691100
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12483388 106 + 22224390
CCAACGAGUGUUUUUGACAGAGUAGCAUAUAUAUGCGUAU--AUGCGGGCAAUAGUCUGCAAUGCAAUGGCAGUUUAGAAGUUCGACUGUGUCUCUGUCUGUCUCUUU
.....(((.......(((((((..((((....))))((((--.(((((((....)))))))))))....((((((.........))))))..)))))))...)))... ( -32.40)
>DroSec_CAF1 12966 102 + 1
CCAACGAGUGUUUUUGACAGAGUAGCAUAUAU----GCAU--AUGCGGGCAAUAAUCUGCAAUGCAAUGGCAGUUUAGAAGUUCGACUGUGUCUCUGUCUGUCUCUUU
.....(((.......(((((((..((.....(----((((--.((((((......)))))))))))...((((((.........)))))))))))))))...)))... ( -28.60)
>DroSim_CAF1 13778 102 + 1
CCAACGAGUGUUUUUGACAGAGUAGCAUAUAU----GCAU--AUGCGGGCAAUAAUCUGCAAUGCAAUGGCAGUUUAGAAGUUCGACUGUGUCUCUGUCUGUCUCUUU
.....(((.......(((((((..((.....(----((((--.((((((......)))))))))))...((((((.........)))))))))))))))...)))... ( -28.60)
>DroEre_CAF1 13546 106 + 1
CCAACGAGUGCUGUUGACAGAGUAGCAUACAUAU--GCAUAAAUGCGGGCAUUAAUCUGCAAUGAAAUGGCAGCUUAGAAGUUCCACUGUGUCUCUGUCUGUCUCUUU
.....(((.((....(((((((..((((....))--))....(((((((((......))).......(((.((((....)))))))))))))))))))).)))))... ( -27.60)
>consensus
CCAACGAGUGUUUUUGACAGAGUAGCAUAUAU____GCAU__AUGCGGGCAAUAAUCUGCAAUGCAAUGGCAGUUUAGAAGUUCGACUGUGUCUCUGUCUGUCUCUUU
.....(((.......(((((((..(((((.......(((....)))((((..(((.((((.........)))).)))...))))...))))))))))))...)))... (-25.10 = -24.72 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:25 2006