Locus 4798

Sequence ID X_DroMel_CAF1
Location 12,472,344 – 12,472,464
Length 120
Max. P 0.961309
window7851

overview

Window 1

Location 12,472,344 – 12,472,464
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 98.06
Mean single sequence MFE -28.62
Consensus MFE -27.79
Energy contribution -27.40
Covariance contribution -0.39
Combinations/Pair 1.07
Mean z-score -1.19
Structure conservation index 0.97
SVM decision value 1.52
SVM RNA-class probability 0.961309
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12472344 120 - 22224390
ACUGAAUAGAAAGCAGGAACCAAAUCCGAUGGGCAAUCGGUUAAAUAUGUGCAACAUGUAACAGGUGAUUCGUGUAAGUCCAUUGGAUAAGGCGAUUCAAAACAUGGAAAACCGGGUGUU
.(((.........)))..(((..(((((((((((..........(((((.....))))).(((.(.....).)))..)))))))))))..((...((((.....))))...)).)))... ( -28.00)
>DroVir_CAF1 3599 120 - 1
ACAGAAUAGAAAGCAGGAACCAAAUCCGAUGGGCAAUCGGUUAAAUAUGUGCAACAUGUAACAGGUGAUUCGUGUAAGUCCAUUGGAUAAGGCGAUUCAAAACAUGGAAAACCGGGCGUU
............((.((..((..(((((((((((..........(((((.....))))).(((.(.....).)))..)))))))))))..))...((((.....))))...))..))... ( -29.00)
>DroGri_CAF1 2155 120 - 1
ACGGAAUAGAAAGCAGGAACCAAGUCCGAUGGGCAAUCGGUUAAAUAUGUGCAACAUGUAACAGGUGAUUCGUGUAAGUCCAUUGGAUAAGGCGAUUCAAAACAUGGAAAACCGGGCGUU
............((.((..((..(((((((((((..........(((((.....))))).(((.(.....).)))..)))))))))))..))...((((.....))))...))..))... ( -29.30)
>DroWil_CAF1 9947 120 - 1
ACUGAAUAAAAAGCAGGAACCAAAUCCGAUGGGCAAUCGGUUAAAUAUGUGCAACAUGUAACAGGUGAUUCGUGUAAGUCCAUUGGAUAAGGCGAUUCAAAACAUGGAAAACCGGGUGUU
.(((.........)))..(((..(((((((((((..........(((((.....))))).(((.(.....).)))..)))))))))))..((...((((.....))))...)).)))... ( -28.00)
>DroMoj_CAF1 3419 120 - 1
ACAGAAUAGAAAGCAGGAACCAAAUCCGAUGGGCAAUCGGUUAAAUAUGUGCAACAUGUAACAGGUGAUUCGUGUAAGUCCAUUGGAUAAGGCGAUUCAAAACAUGGAAAACCGGGCGUU
............((.((..((..(((((((((((..........(((((.....))))).(((.(.....).)))..)))))))))))..))...((((.....))))...))..))... ( -29.00)
>DroPer_CAF1 3199 120 - 1
ACUGAAUAGAAAGCAGGAACCAAAUCCGAUGGGCAAUCGGUUAAAUAUGUGCAACAUGUAACAGGUGAUUCGUGUAAGUCCAUUGGAUAAGGCGAUUCAAAACAGGGAAAACCGGGUGUU
..(((((.....((.(....)..(((((((((((..........(((((.....))))).(((.(.....).)))..)))))))))))...)).)))))..((.((.....))..))... ( -28.40)
>consensus
ACUGAAUAGAAAGCAGGAACCAAAUCCGAUGGGCAAUCGGUUAAAUAUGUGCAACAUGUAACAGGUGAUUCGUGUAAGUCCAUUGGAUAAGGCGAUUCAAAACAUGGAAAACCGGGCGUU
............((.((..((..(((((((((((..........(((((.....))))).(((.(.....).)))..)))))))))))..))...(((........)))..))..))... (-27.79 = -27.40 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:24 2006