| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,471,362 – 12,471,469 |
| Length | 107 |
| Max. P | 0.542558 |
| Location | 12,471,362 – 12,471,469 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 79.56 |
| Mean single sequence MFE | -35.28 |
| Consensus MFE | -26.52 |
| Energy contribution | -26.75 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.542558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12471362 107 + 22224390 -CUUUCC-------G-CACAGUUGCUUAUUGCAUUUGAGUGCGGGCUGCUUGUGCUGUGGGAUCUGAAGGCGAAAUGCGCUGAGCUGCGAUGGCAGGCGGCCGAGGCCGUCAAGUC -...(((-------(-(((...(((.....))).....)))))))..((((.((((((.(.(.((...((((.....)))).)).).).))))))((((((....)))))))))). ( -40.00) >DroVir_CAF1 2862 115 + 1 -AAUCCCGAAUGGCUAAACAGUUGCUUAUUGCAUUUGAGUGCGGGCUGCUUGUGCUGUGGGAUCUGAAGUUGAAGGGCGCGGAGAUACGAUGGCAGGCAGCCGAGGCGGUUAAAUC -((((((.....((....(((.(((.....))).)))...)).((((((((((..((((...((((..((......)).))))..))))...))))))))))..)).))))..... ( -34.70) >DroGri_CAF1 1425 106 + 1 ---------AUUGUU-UACAGUUGCUUAUUGCAUUUGAGUGUGGGCUGCUUGUGUUGUGGGAUCUGAAAGUGAAAUGCGCUGAAAUACGAUGGCAGGCAGCCGAGGCUGUUAAAUC ---------......-..(((.(((.....))).)))(((.(.((((((((((((((((...((....((((.....))))))..)))))).)))))))))).).)))........ ( -33.30) >DroWil_CAF1 9202 108 + 1 CCCUUUU-------G-UUUAGUUGCUUAUUGCAUUUGAAUGUGGUCUGCUUGUAUUAUGGGAUCUAAAGGCCAAAUGCGCUGAGAUACGAUGGCAGGCUGCCGAGGCUGUUAAAUC .((((..-------(-(((((.(((.....))).))))))(..(((((((......((.(.((((...((((....).))).)))).).)))))))))..).)))).......... ( -27.90) >DroMoj_CAF1 2635 114 + 1 -AAUCCCAUAUCAAU-GACAGUUGCUUAUUGCAUUUGAGUGUGGGCUGCUUGUGUUGUGGGAUCUGAAGGCGAAGGCCGCUGAGUUUCGAUGGCAAGCAGCGGAGGCGGUUAAAUC -((((((((((((((-(.((((.....)))))).)))).)))))((((((..(((..(.(((.((.(.(((....)))..).)).))).)..)))))))))......))))..... ( -38.10) >DroAna_CAF1 2001 107 + 1 -UUUUCU-------C-UUUAGUUGCUUAUUGCAUUUGAGUGCGGGCUGCUUGUGUUGUGGGAUCUGAAGGCGAAAUGCGCCGAGAUACGAUGGCAGGCGGCCGAGGCGGUGAAAUC -......-------.-((((.((((((..(((((....)))))(((((((((((((((...((((...((((.....)))).))))))))).)))))))))).))))))))))... ( -37.70) >consensus _AAUUCC_______U_UACAGUUGCUUAUUGCAUUUGAGUGCGGGCUGCUUGUGUUGUGGGAUCUGAAGGCGAAAUGCGCUGAGAUACGAUGGCAGGCAGCCGAGGCGGUUAAAUC .......................((((...((((....)))).((((((((((..(((.(.((((...((((.....)))).)))).).))))))))))))).))))......... (-26.52 = -26.75 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:23 2006