Locus 4794

Sequence ID X_DroMel_CAF1
Location 12,466,520 – 12,466,627
Length 107
Max. P 0.546311
window7844

overview

Window 4

Location 12,466,520 – 12,466,627
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 97.94
Mean single sequence MFE -31.62
Consensus MFE -29.72
Energy contribution -29.52
Covariance contribution -0.20
Combinations/Pair 1.08
Mean z-score -1.18
Structure conservation index 0.94
SVM decision value 0.03
SVM RNA-class probability 0.546311
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12466520 107 + 22224390
CCUGGUUAAAGCAAGGGAAAACCUCGGUCAGGGUUGCCAACGCAUUGGGCUAACAAUCCGAAAUCAAAGCCAGCGACAACCAUACGGACUCGUUGGUGCUUUGCAUA
..........((((((.......((((.....((((((.........))).)))...)))).......((((((((...((....))..)))))))).))))))... ( -30.50)
>DroSec_CAF1 5353 107 + 1
CCUGGUUAAAGCAAGGGAAAACCUCGGUCAGGGUUGCCAACGCAUUGGGCUAACAAUCCGAAAUCAAAGCCAGCGGCAACCAUACGGACUCGUUGGUGCUUUGCAUA
..........((((((....(((.(((((..(((((((...((....((((................)))).))))))))).....))).))..))).))))))... ( -32.89)
>DroSim_CAF1 5369 107 + 1
CCUGGUUAAAGCAAGGGAAAACCUCGGUCAGGGUUGCCAACGCAUUGGGCUAACAAUCCGAAAUCAAAGCCAGCGGCAACCAUACGGACUCGUUGGUGCUUUGCAUA
..........((((((....(((.(((((..(((((((...((....((((................)))).))))))))).....))).))..))).))))))... ( -32.89)
>DroEre_CAF1 5420 107 + 1
CCUGGUUAAAGCAAGGGAAAACCUCGGUCAGGGUUGCCAACGCAUUGGGCUAACAAUCCGAAAUCAAAGCCAGCGACAACCAUACGGACUCGCUGGUGCUUUGCAUA
..........((((((.......((((.....((((((.........))).)))...)))).......((((((((...((....))..)))))))).))))))... ( -32.90)
>DroYak_CAF1 5418 107 + 1
CCUGGUUAAAGCAAGGGAAAACCUCGGUCAGGGUUGCCAACGCAUUGGGCCAACAAACCGAAAUCAAAGCCAGCGACAACCAUACCGACUCGUUGGUGCUUUGCAUA
..........((((((.......(((((....((((((((....))))..))))..))))).......((((((((.............)))))))).))))))... ( -28.92)
>consensus
CCUGGUUAAAGCAAGGGAAAACCUCGGUCAGGGUUGCCAACGCAUUGGGCUAACAAUCCGAAAUCAAAGCCAGCGACAACCAUACGGACUCGUUGGUGCUUUGCAUA
..........((((((.......((((.....((((((.........))).)))...)))).......((((((((...((....))..)))))))).))))))... (-29.72 = -29.52 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:17 2006