Locus 4793

Sequence ID X_DroMel_CAF1
Location 12,465,152 – 12,465,265
Length 113
Max. P 0.875285
window7843

overview

Window 3

Location 12,465,152 – 12,465,265
Length 113
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 90.86
Mean single sequence MFE -23.73
Consensus MFE -21.05
Energy contribution -21.49
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -1.77
Structure conservation index 0.89
SVM decision value 0.89
SVM RNA-class probability 0.875285
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12465152 113 - 22224390
AUAUUGAGUACUAUCUGAAUGCCGUGAUUCCUGAAUUAUAAAUUUAAAGAUUAGAUAUUAAUGUUACUAUCAACAUAGAUUUAUACGUUCUAUCCGGCCUAGAGCGUGCUCUC
.....((((((..((((...((((.(((....((((((((((((((..(((..((((....))))...)))....)))))))))).)))).))))))).))))..)))))).. ( -27.70)
>DroSec_CAF1 3982 113 - 1
AUAUUGAGUACUAUCUGAAUGCCGUGAUUCCUGAAUUAUAAAUUCAAAGAUUAGAUAUUAAUGUUACUAUCAACGUCGAUUUAUACCAUCUAUCCGGCCUAGAGCGUGCUCUU
.....((((((..((((...((((.(((...(((((.....))))).((((((...((..(((((......)))))..))...))..))))))))))).))))..)))))).. ( -25.00)
>DroSim_CAF1 4002 113 - 1
AUAUUGAGUACUAUCUGAAUGCCGUGAUUCCUGAAUUAUAAAUUUAAAGAUUAGAUAUUAAUGUUACUAUCAACGUAGAUUUAUACCAUCUAUCCGGCCUAAAGCGUGCUCUU
.....((((((...((....((((.(((....((..((((((((((..(((..((((....))))...)))....))))))))))...)).)))))))....)).)))))).. ( -23.20)
>DroYak_CAF1 4024 113 - 1
GUACUGAGCACUAUCUGAUUACCGUGAUUCCAGAAUUAUAAAUUUAAAGAUUAGAUAUUAAUAUUACUAUCAACGUAGAUUUAUACGAACCAUCCGGCCAAGAACGUGUUCCC
.....((((((..(((.....(((.(((........((((((((((..(((..((((....))))...)))....))))))))))......))))))...)))..)))))).. ( -19.04)
>consensus
AUAUUGAGUACUAUCUGAAUGCCGUGAUUCCUGAAUUAUAAAUUUAAAGAUUAGAUAUUAAUGUUACUAUCAACGUAGAUUUAUACCAUCUAUCCGGCCUAGAGCGUGCUCUC
.....((((((..((((...((((.(((........((((((((((..(((..((((....))))...)))....))))))))))......))))))).))))..)))))).. (-21.05 = -21.49 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:16 2006