Locus 4792

Sequence ID X_DroMel_CAF1
Location 12,457,668 – 12,457,760
Length 92
Max. P 0.953180
window7842

overview

Window 2

Location 12,457,668 – 12,457,760
Length 92
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 81.85
Mean single sequence MFE -18.96
Consensus MFE -13.74
Energy contribution -14.18
Covariance contribution 0.44
Combinations/Pair 1.06
Mean z-score -2.31
Structure conservation index 0.72
SVM decision value 1.43
SVM RNA-class probability 0.953180
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12457668 92 + 22224390
GUAUAUAAAAAUAAAGGAAAA--------------AAAAUAGAAGUGAAGUUC--GGAGAAACCGCAACAGCAAUUCUCGACAUAAUGAUUGUGUUGAGGGGCGAUUA
.....................--------------..............((((--((.....))).))).((...((((((((((.....)))))))))).))..... ( -17.90)
>DroSec_CAF1 10354 94 + 1
GUAUAUAAAAAUAAAAGGAAA-AU-----------AAAAAAGAAGUGAAGUUC--GGGGAAACCGCAACAGCAAUUCUCGACAUAAUGAUUGUGUUGAGGGGCGAUUA
.....................-..-----------..............((((--((.....))).))).((...((((((((((.....)))))))))).))..... ( -19.20)
>DroSim_CAF1 10015 94 + 1
GUACAUAAAAAUAAAAGGAAA-AU-----------AAAAAAGAAGUGAAGUUC--GGGGAAACCGCAACAGCAAUUCUCGACAUAAUGAUUGUGUUGAGGGGCGAUUA
.....................-..-----------..............((((--((.....))).))).((...((((((((((.....)))))))))).))..... ( -19.20)
>DroEre_CAF1 11037 100 + 1
AUAUUUAAACAAAAAAAGAAA-ACC-----GAAAGGGAAGUGAAGUGAAGUUC--GGGGAAACCGCAACAGCAAUGCUCGACAUAAUGAUUGUGAUGAGGGGCGAUUA
.....................-.((-----....)).............((((--.((....))((....))....((((.((((.....)))).))))))))..... ( -19.40)
>DroYak_CAF1 11669 108 + 1
AUAAGAAAAAAACAGAAGAAAAACCGAAGGGAAAGGGAAGUAAAGUGAAGUUUCGGGGGAAACCGCAACAGCAAUUCUCGACAUAAUGAUUGUGAUGAGGGGCGAUUA
.......................((....))....((((.(.......).))))(.((....)).)....((...(((((.((((.....)))).))))).))..... ( -19.10)
>consensus
GUAUAUAAAAAUAAAAGGAAA_AC___________AAAAAAGAAGUGAAGUUC__GGGGAAACCGCAACAGCAAUUCUCGACAUAAUGAUUGUGUUGAGGGGCGAUUA
.................................................((((...((....))((....))....(((((((((.....)))))))))))))..... (-13.74 = -14.18 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:15 2006