Locus 4782

Sequence ID X_DroMel_CAF1
Location 12,423,963 – 12,424,083
Length 120
Max. P 0.861263
window7826

overview

Window 6

Location 12,423,963 – 12,424,083
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -50.03
Consensus MFE -47.39
Energy contribution -47.83
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -2.06
Structure conservation index 0.95
SVM decision value 0.83
SVM RNA-class probability 0.861263
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12423963 120 - 22224390
UAUCACCGGACCCGUAAUGGUCGCCGGCGAGCACAAAUUCCAUCCGGAGUGCUUCUGCUGCACGGCAUGCGGCUCCUUCAUCGGCGAGGGCGAAUCGUACGCCCUUGUCGAGCGUUCGAA
..((...(((.(((((...((((.((((((((((....(((....)))))))))..))))..)))).))))).)))....((((((((((((.......))))))))))))......)). ( -51.60)
>DroSim_CAF1 2688 120 - 1
UAUCACCGGACCCGUCAUGGUCGCCGGCGAGCACAAAUUCCAUCCGGAGUGCUUCUGCUGCACGGCAUGCGGCUCCUUCAUCGGCGAGGGCGAAUCGUACGCCCUUGUCGAACGUUCGAA
..((...(((.(((.((((.(((.((((((((((....(((....)))))))))..))))..)))))))))).)))....((((((((((((.......))))))))))))......)). ( -51.50)
>DroYak_CAF1 2906 120 - 1
UAUUACCGGACCCGUAAUGGUCGCCGGCGAGCACAAAUUCCAUCCGGAGUGCUUUUGCUGCACGGCAUGCGGCUCCUUCAUCGGCGAGGGCGAAUCGUAUGCGCUUGUCGAGCGUUCGAA
......((((((......))))((((((((((......(((....)))((((.......)))).(((((((.(.(((((......))))).)...))))))))))))))).))...)).. ( -47.00)
>consensus
UAUCACCGGACCCGUAAUGGUCGCCGGCGAGCACAAAUUCCAUCCGGAGUGCUUCUGCUGCACGGCAUGCGGCUCCUUCAUCGGCGAGGGCGAAUCGUACGCCCUUGUCGAGCGUUCGAA
.......(((.(((((...((((.((((((((((....(((....)))))))))..))))..)))).))))).)))....((((((((((((.......))))))))))))......... (-47.39 = -47.83 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:00 2006