Locus 4781

Sequence ID X_DroMel_CAF1
Location 12,421,251 – 12,421,371
Length 120
Max. P 0.699270
window7825

overview

Window 5

Location 12,421,251 – 12,421,371
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -48.27
Consensus MFE -45.72
Energy contribution -44.83
Covariance contribution -0.88
Combinations/Pair 1.11
Mean z-score -1.74
Structure conservation index 0.95
SVM decision value 0.35
SVM RNA-class probability 0.699270
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12421251 120 - 22224390
ACAGUAUGCGGGCCAGGCGUCGCCAACGUUUCUUGGGCGCCCAGGAGGAGCGUCGUAAUCUCACGCCCGACACGGAGUCCAAGGAAAGGGCUUUGAAGAAGGCGCUGAAGAAAUGUCGUC
.......((((((........))).(((((((((.((((((..(..((.((((.(......)))))))..).((((((((.......)))))))).....)))))).)))))))))))). ( -47.30)
>DroSim_CAF1 113 120 - 1
ACAGUAUGCGAGCCAGGCGUCGCCAGCGUUUCUUGGGCGCCCAGGAGGAGCGUCGUAAUCUCACGCCCGACACGGAGUCCAAGGAAAGGGCUUUGAAGAAGGCGCUGAAGAAAUGUCGUC
.......((((((...)).))))..(((((((((.((((((..(..((.((((.(......)))))))..).((((((((.......)))))))).....)))))).))))))))).... ( -47.40)
>DroYak_CAF1 121 120 - 1
ACAGCAUGCGGGCGAGGCGUCGCCAGCGUUUCUUGGGCGCCCAGGAGGAGCGACGUAAUCUCACGCCCGAUACGGAGUCCAAGGAAAGGGCUUUGAAGAAGGCGCUGAAGAAAUGCCGUC
.......((((((((....))))).(((((((((.((((((.....((.(((...........)))))....((((((((.......)))))))).....)))))).)))))))))))). ( -50.10)
>consensus
ACAGUAUGCGGGCCAGGCGUCGCCAGCGUUUCUUGGGCGCCCAGGAGGAGCGUCGUAAUCUCACGCCCGACACGGAGUCCAAGGAAAGGGCUUUGAAGAAGGCGCUGAAGAAAUGUCGUC
.......((((((...)).))))..(((((((((.((((((..(..((.(((...........)))))..).((((((((.......)))))))).....)))))).))))))))).... (-45.72 = -44.83 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:59 2006