Locus 478

Sequence ID X_DroMel_CAF1
Location 1,400,362 – 1,400,471
Length 109
Max. P 0.879860
window738

overview

Window 8

Location 1,400,362 – 1,400,471
Length 109
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 79.00
Mean single sequence MFE -22.28
Consensus MFE -14.67
Energy contribution -15.73
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -1.99
Structure conservation index 0.66
SVM decision value 0.91
SVM RNA-class probability 0.879860
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1400362 109 + 22224390
UUAAAAUGUGCAACUAUGACAGCUCCUCC---UCCUCCUCCUUUUGAUCCGUCCUCAUUCGCAACCGCCGGAGCUCAUCCUU-UCCCGGCUGGCCAUUGCCAUUGCCAUUUAU
...(((((.((((..((((..(((((...---............(((.......)))...((....)).)))))))))....-....(((........))).))))))))).. ( -22.00)
>DroSec_CAF1 5771 106 + 1
UUAAAAUGUGCAACUAUGACAGCUCCUCCCCCUCCUCCUCCUGCUGAUCCCUCC------GCAUCCGCCGGAGCUCAUCCUU-UCCCGGCUGGCCAUUGCCAUUGCCAUUUAU
...(((((.((((......((((...................))))........------......(((((...........-..)))))((((....))))))))))))).. ( -23.53)
>DroEre_CAF1 2275 97 + 1
UUAAAAUGUGCAACUAUGACAGCUCCUCCCGCUUCUACUCCCGC---UCCCACCGC------AUCCGCCGGAGCUCAUCCUG-UCCAGGCUGGCCAUU------GCCAUUUAU
...(((((.((((....((((((.......))..........((---(((....((------....)).)))))......))-))..((....)).))------))))))).. ( -21.40)
>DroYak_CAF1 1357 100 + 1
UUAAAAUGUGCAACUAUGACAGCUCCUCCUGCC----CUCCUGC---AUCCACCGCACUCACAUCCGCCGGAGCUCAUCCUUUUGCAGGCUGGCCAUU------GCCAUUUAU
...(((((.((((.......((......))(((----..(((((---(......((..........)).(((.....)))...))))))..)))..))------))))))).. ( -22.20)
>consensus
UUAAAAUGUGCAACUAUGACAGCUCCUCCCGCUCCUCCUCCUGC___UCCCACCGC____GCAUCCGCCGGAGCUCAUCCUU_UCCAGGCUGGCCAUU______GCCAUUUAU
...(((((.((((..(((.(((((.............((((.((......................)).))))..............)))))..))).....))))))))).. (-14.67 = -15.73 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:34 2006