Locus 4778

Sequence ID X_DroMel_CAF1
Location 12,418,630 – 12,418,740
Length 110
Max. P 0.998320
window7821

overview

Window 1

Location 12,418,630 – 12,418,740
Length 110
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 94.63
Mean single sequence MFE -32.94
Consensus MFE -33.30
Energy contribution -32.74
Covariance contribution -0.56
Combinations/Pair 1.10
Mean z-score -1.73
Structure conservation index 1.01
SVM decision value 3.07
SVM RNA-class probability 0.998320
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12418630 110 + 22224390
AUCGGUUCGGCGCGGCCACUGUUCUACUGGCAUACGUCCGUAUAACAAGGGCCCGACUCAAAUGUCUUAUGUAAGCAGUUAAUUGCAAGCGUUUCGAUCCUAUAUGUAUA-
...((.(((((((((((..((((.(((.(((....))).))).))))..)))).(((......)))........((((....))))..))))..))).))..........- ( -32.60)
>DroSec_CAF1 12702 106 + 1
AUCGGUUCGGCGCGGCCACUGUUCUACUGGCAUACGUCCGUAUAACAAGGGCCCGACUCAAAUGUCUUAUAGAAGCAGUUAAUUGCAAGCGUUUCGAUCCUAUA----UA-
...((.(((((((((((..((((.(((.(((....))).))).))))..)))).(((......)))........((((....))))..))))..))).))....----..- ( -32.60)
>DroSim_CAF1 14009 106 + 1
AUCGGUUCGGCGCGGCCACUGUUCUACUGGCAUACGUCCGUAUAACAAGGGCCCGACUCAAAUGUCUUAUUCAAGCAGUUAAUUGCAAGCGUUUCGAUCCUAUA----UA-
...((.(((((((((((..((((.(((.(((....))).))).))))..)))).(((......)))........((((....))))..))))..))).))....----..- ( -32.60)
>DroEre_CAF1 12986 106 + 1
AUCGGUUCGGCGCGGCCACUGUUCUACUGGCAUACGUCCGUAUAACAAGGGCCCGGCUCAAGUGCCUUAUAGAAGCAGUUAAUUGCAAGCGUUUCGAUCCUAUA----UA-
...((.(((((((((((..((((.(((.(((....))).))).))))..)))).(((......)))........((((....))))..))))..))).))....----..- ( -34.70)
>DroYak_CAF1 12549 107 + 1
AUCGGUUCGGCGCGGCCACUGUUCUACUGGCAUACGUCCGUAUAACAAGGGCCCGGCUCAAGUGUCUUGUAGAAGCGGUUAAUUGCAAGCGUUUCGAUCCUAUA----UAU
...((.(((.((.((((..((((.(((.(((....))).))).))))..)))))).)..............((((((.((......)).)))))))).))....----... ( -32.20)
>consensus
AUCGGUUCGGCGCGGCCACUGUUCUACUGGCAUACGUCCGUAUAACAAGGGCCCGACUCAAAUGUCUUAUAGAAGCAGUUAAUUGCAAGCGUUUCGAUCCUAUA____UA_
...((.(((((((((((..((((.(((.(((....))).))).))))..)))).(((......)))........((((....))))..))))..))).))........... (-33.30 = -32.74 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:55 2006