Locus 4773

Sequence ID X_DroMel_CAF1
Location 12,403,998 – 12,404,105
Length 107
Max. P 0.810361
window7814

overview

Window 4

Location 12,403,998 – 12,404,105
Length 107
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 84.64
Mean single sequence MFE -23.80
Consensus MFE -15.29
Energy contribution -18.04
Covariance contribution 2.75
Combinations/Pair 1.13
Mean z-score -2.22
Structure conservation index 0.64
SVM decision value 0.65
SVM RNA-class probability 0.810361
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12403998 107 + 22224390
CUGCAUUAAACUCAGUAUUUGUGCUAACAAAAUUAGUUUCAAAGCGAAA--AAACUACUCUAAGCUAUGGUACUUUUGAGUUU-UAUGUUUUGAAAGUAUUUUUGUUAGC
......................((((((((((.((.((((((((((.((--(....((((.(((........)))..))))))-).)))))))))).)).)))))))))) ( -26.50)
>DroSec_CAF1 6692 107 + 1
CUGCAUUAAACUCAGUAUUCGUGCUAACAAAAUUAGUUUCAAAGCGAAA--AAACAACUCUAAGCUAUGGUACUUUUGAGUUU-UAUGUUCUGGAAGUAUUUUUGUUAGC
......................((((((((((.((.(((((.((((.((--(....((((.(((........)))..))))))-).)))).))))).)).)))))))))) ( -22.50)
>DroEre_CAF1 7121 110 + 1
GUGCAUUAAACUCAGUAUUUCUGCAAACAAAAUCACUUUUAAAACGAAAAAAAACUACCAAAAACUAUGGUAGUUUUGAGUUUUUUUGGCUUGGAAGUAUUUUUGUUAGC
.((((..((........))..))))(((((((..((((((((..((((((((((((((((.......)))))))).....))))))))..))))))))..)))))))... ( -28.40)
>DroYak_CAF1 7051 106 + 1
GUGCAUUAAACUCAGCAUUUCUGCAAAGAUAAUCAGUUUCAAAACGAAA---AACUAUUGUAAACUAUGGUUCUUUUGAGUUU-UUUGUUUUAAAAGUAUUUUUAUUAGC
..((..........(((....)))(((((((.....(((.(((((((((---((((...(..(((....)))..)...)))))-)))))))))))..)))))))....)) ( -17.80)
>consensus
CUGCAUUAAACUCAGUAUUUCUGCAAACAAAAUCAGUUUCAAAACGAAA__AAACUACUCUAAACUAUGGUACUUUUGAGUUU_UAUGUUUUGAAAGUAUUUUUGUUAGC
......................((((((((((.((.((((((((((((...(((((.......((....)).......))))).)))))))))))).)).)))))))))) (-15.29 = -18.04 +   2.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:49 2006