Locus 4771

Sequence ID X_DroMel_CAF1
Location 12,401,026 – 12,401,130
Length 104
Max. P 0.883254
window7811

overview

Window 1

Location 12,401,026 – 12,401,130
Length 104
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 75.50
Mean single sequence MFE -28.60
Consensus MFE -12.68
Energy contribution -11.76
Covariance contribution -0.92
Combinations/Pair 1.29
Mean z-score -2.05
Structure conservation index 0.44
SVM decision value 0.93
SVM RNA-class probability 0.883254
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12401026 104 + 22224390
CUUGUGAUGAAUGCUAGGUGGUGAUUCAUCGCUAAAAACGUAAUGAAUGAAAAUACAGGGUACAUAUA--------G----GUACGUUUG----UAUGUGUAUGCUUAGCGUGCUUGAGU
...((((((((((((....))).))))))))).......(((.((.((....)).))...)))...((--------(----(((((((.(----(((....))))..))))))))))... ( -27.50)
>DroSec_CAF1 3800 90 + 1
CUUGU--------------GGUGAUUCACCGCUGAAAACGUAAUGAAUGAAACUACAGGGUACAUAUA--------G----GUACGUAUG----UAUGUGUAUGCUUAGGCUGCUUGAGU
(((((--------------(((.(((((..(((....).))..)))))...))))))))(((((((((--------.----((....)).----)))))))))(((((((...))))))) ( -25.40)
>DroSim_CAF1 4701 90 + 1
CUUGU--------------GGUGAUUCACCGCUGAAAACGUAAUGAAUGAAACUACAGGGUACAUAUA--------G----GUACGUAUG----UAUGUGUAUGCUUAGGCUGCUUAAGU
(((((--------------(((.(((((..(((....).))..)))))...))))))))(((((((((--------.----((....)).----)))))))))(((((((...))))))) ( -25.30)
>DroEre_CAF1 4119 120 + 1
UUCGUGAUGCAUACUAAGCGGUGAUUCACUGUUGAAGCCGUAAUGAAUGGAACUGCAGGGUACAUAUGUACAUACAUAUAUGCACGUAUGUACAUAUGUGUAUGCUUAGACUGCUUGAGC
((((....(((..(((((((........((((.....((((.....))))....))))..(((((((((((((((..........)))))))))))))))..)))))))..))).)))). ( -38.40)
>DroYak_CAF1 3985 108 + 1
CCCGUGAUGAAUACUAGGAGGUGAUUCACUGCUGCAAACGUAAUGAAUGGAACUGCAGGGUACAUAUA--------UGUAUAUACGUAUG----UAUGUGUAUGCUUAGACUGCUUAAGU
(((((..((((((((....))).)))))..))((((..(((.....)))....)))))))((((((((--------(((((....)))))----)))))))).((((((.....)))))) ( -26.40)
>consensus
CUUGUGAUG_AU_CUA_G_GGUGAUUCACCGCUGAAAACGUAAUGAAUGAAACUACAGGGUACAUAUA________G____GUACGUAUG____UAUGUGUAUGCUUAGACUGCUUGAGU
(((((..............((((...))))........(((.....))).....)))))((((((((((........................))))))))))((((((.....)))))) (-12.68 = -11.76 +  -0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:47 2006