Locus 4770

Sequence ID X_DroMel_CAF1
Location 12,399,329 – 12,399,431
Length 102
Max. P 0.718034
window7810

overview

Window 0

Location 12,399,329 – 12,399,431
Length 102
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 93.26
Mean single sequence MFE -30.94
Consensus MFE -28.16
Energy contribution -28.24
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -1.21
Structure conservation index 0.91
SVM decision value 0.39
SVM RNA-class probability 0.718034
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12399329 102 + 22224390
GCUUGCGACUUGCUGGUGUUGCGCAAACUGUGGUUUACUUUUCGCCACAUGCGCUCCAUCUUGAAAAAUCCGCUUGAUUCCUUGCGGCGA-UUCGAUAAUGUU
.....(((.((((.((((..(((((...((((((.........)))))))))))..))))..........(((..(....)..)))))))-.)))........ ( -29.90)
>DroSec_CAF1 2181 102 + 1
GCUUGCGACUUGCUGGUGUUGCGCAAACUGUGGUUCACUUUUCGCCACAUGCGCUCCAUCUUGAAGAAUCCGCUAGAUUCCUUGCGGCGA-UUCGAUGAUGUU
((..(((((........)))))(((...((((((.........)))))))))))..(((((((((....((((.((....)).))))...-))))).)))).. ( -31.60)
>DroSim_CAF1 3082 102 + 1
GCUUGCGACUUGCUGGUGUUGCGCAAACUGUGGUUCACUUUUCGCCACAUGCGCUCCAUCUUGAAGAAUCCGCUAGAUUCCUUGCGGCGA-UUCGAUGAUGUU
((..(((((........)))))(((...((((((.........)))))))))))..(((((((((....((((.((....)).))))...-))))).)))).. ( -31.60)
>DroEre_CAF1 2441 102 + 1
GGUUGCGACUUGCUGGUGUUGCGCAAACUGUGGUUUACUUUUCGCCACAUGCGCUCCAUCUUGAAGAAACCGCUAGAUUCUUUGCGGUGG-UUCGAUGAAGAA
........(((...((((..(((((...((((((.........)))))))))))..))))(((((...(((((..........)))))..-)))))..))).. ( -30.10)
>DroYak_CAF1 2275 103 + 1
GCUUGCGACUUGCUGGUGUUGCGCAAACUGUGGUUUACUUUUCGCCACAUGCGCUCCAUCUUGAAGAAUCCGCUAGAUUCCUUGCGGUGCAAUCAAUGAAGUU
(.(((((.(((...((((..(((((...((((((.........)))))))))))..))))...)))...((((.((....)).))))))))).)......... ( -31.50)
>consensus
GCUUGCGACUUGCUGGUGUUGCGCAAACUGUGGUUUACUUUUCGCCACAUGCGCUCCAUCUUGAAGAAUCCGCUAGAUUCCUUGCGGCGA_UUCGAUGAUGUU
....((.....)).((((..(((((...((((((.........)))))))))))..))))(((((....((((.((....)).))))....)))))....... (-28.16 = -28.24 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:46 2006