Locus 477

Sequence ID X_DroMel_CAF1
Location 1,400,124 – 1,400,216
Length 92
Max. P 0.706948
window737

overview

Window 7

Location 1,400,124 – 1,400,216
Length 92
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 73.33
Mean single sequence MFE -33.05
Consensus MFE -12.02
Energy contribution -14.53
Covariance contribution 2.50
Combinations/Pair 1.20
Mean z-score -2.79
Structure conservation index 0.36
SVM decision value 0.37
SVM RNA-class probability 0.706948
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1400124 92 + 22224390
AGUGGGAGUGCGAUUGGCGGUGCGAGUGGGAGGGGGUCAGCGCGAAUGCGCCAGCUCGCUCGCUCGGACGCACGCAAA-AAAUAUGCAAAAAC
.(((....((((....(((.(.((((((((...((((..((((....))))..)))).)))))))).)))).))))..-...)))........ ( -33.80)
>DroSec_CAF1 5536 92 + 1
AGUGGGAGUGUGAUUGGCGGUGAGAGUGGGAGGGGGUCGGCGCGAGUGCGCCAGCUCGCUCGCUCGGACGCACGCAAA-AAAUAUGCAAAAAC
.......(((((.((.((((((.(((((((...((((.(((((....))))).)))).)))))))...))).)))...-)).)))))...... ( -35.50)
>DroEre_CAF1 2056 76 + 1
------------AGUGGGAGUUUGAGUGGGAAGGGGGCAGCGCGAGUGCGCCAGCUCG----CUCGAACGCACGCAAA-AAAUAUGCAAAAAC
------------.(((...(((((((((((...((.(((.(....)))).))..))))----))))))).)))(((..-.....)))...... ( -32.20)
>DroAna_CAF1 12332 88 + 1
AGUGUGAGUGGGAUGGGUAGU---CGAGAGAGCAGGUCAGCAAUAGUGCA--ACCUGCCUCGCUCGGACGCAUGCAAAAAAAUCUGCAAAAAC
.((.((((((((........(---(....))((((((..(((....))).--)))))))))))))).))...((((........))))..... ( -30.70)
>consensus
AGUGGGAGUG_GAUUGGCAGUG_GAGUGGGAGGGGGUCAGCGCGAGUGCGCCAGCUCGCUCGCUCGGACGCACGCAAA_AAAUAUGCAAAAAC
...................((.((((((((..(((....((((....))))...))).)))))))).))....(((........)))...... (-12.02 = -14.53 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:33 2006