| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,398,939 – 12,399,046 |
| Length | 107 |
| Max. P | 0.717456 |
| Location | 12,398,939 – 12,399,046 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 74.46 |
| Mean single sequence MFE | -47.48 |
| Consensus MFE | -23.44 |
| Energy contribution | -23.58 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.717456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12398939 107 - 22224390 CGCCGCAGGCGACGCCGUCGGAAAAGUCGCCCACGACGUGGCGGUGGAAUGG---GUGUCACCAGUUGCGUCGGCGAUCCUGGUGGCGACAAUAUGUCGUAAGUUUA----AAU- .(((((.((((((.((...))....))))))..(((((..(((((((.....---...))))).))..))))).........)))))(((.....))).........----...- ( -43.70) >DroVir_CAF1 5560 109 - 1 CGUCGGCGGCGGCGUCGCCGCAAGAGCCGGCCGCGACGCAGCGGCGGCAUGGCCAGUGUGACCAGCUGUGUGGGCGAUGCCGGUGGCGAUAACAUGUCGUAAGUACA----GC-- .((((.((.((((((((((......((((.((((......))))))))...((((((.......)))).)).)))))))))).)).))))....((((....).)))----..-- ( -54.50) >DroWil_CAF1 1718 111 - 1 CGUCGACGGCGGCGUCGCCGAAAGAGUCGACCACGUCGAGGCGGUGGCAUGA---GUGUCACCAGCUGUGUAGGAGACGGCGGUGGUGAUAAUAUGUCGUAAGUUCUA-CAAACA ((((..(((((..((((((....).).))))..))))).))))..((((((.---.((((((((.((((...(....).)))))))))))).))))))(((.....))-)..... ( -43.90) >DroYak_CAF1 1912 107 - 1 CGCCGCAGGCGACGCCGGCGCAAGAGUCGUCCGCGACGUGGCGGUGGCAUGG---GAGUCACCAGUUGCGUCGGUGAUCCUGGCGGCGACAAUAUGUCGUAAGUUGA----AAU- .((((((((...(((((((((((..((((....)))).....((((((....---..))))))..)))))))))))..))).)))))(((.....))).........----...- ( -52.20) >DroMoj_CAF1 4241 109 - 1 CGCCGGCGUCGACGUCGACGCAAGAGCCGACCGCGACGCAGCGGCGGCAUGGCCAGUGUUACCAGCUGCGUGGGCGAUGCUGGCGGUGAUAACAUGUCGUAAGUAAA----GC-- ((((.((((((....))))))....((((.((((......))))))))...(((((((((.(((......)))..)))))))))))))...................----..-- ( -49.10) >DroAna_CAF1 2552 111 - 1 CGAAGGAGACGCCGCAGGCGGAAGAGCCGGCCCCGACGCAGUGGGGGCAUGG---GCGUUACCAGUUGUGUUGGUGAUCCAGGAGGCGAUAAUAUGUCGUAAGUAUUACCUAAU- ....((.((((((.(((((......))).(((((.((...)).))))).)))---))))).)).........((((((.(.....(((((.....)))))..).))))))....- ( -41.50) >consensus CGCCGGAGGCGACGCCGCCGCAAGAGCCGACCGCGACGCAGCGGUGGCAUGG___GUGUCACCAGCUGCGUCGGCGAUCCUGGUGGCGAUAAUAUGUCGUAAGUACA____AAU_ (((((..((((((.....(....).)))).)).(.(((((((((.(((((.....))))).)).))))))).).......)))))(((((.....)))))............... (-23.44 = -23.58 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:45 2006