Locus 4768

Sequence ID X_DroMel_CAF1
Location 12,396,989 – 12,397,105
Length 116
Max. P 0.813712
window7808

overview

Window 8

Location 12,396,989 – 12,397,105
Length 116
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 80.55
Mean single sequence MFE -30.22
Consensus MFE -22.43
Energy contribution -22.52
Covariance contribution 0.09
Combinations/Pair 1.22
Mean z-score -1.68
Structure conservation index 0.74
SVM decision value 0.66
SVM RNA-class probability 0.813712
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12396989 116 - 22224390
GAACUGUACCGCUCCAAUAGCUUCAAGUUCGAGCGAUUCGAGCGCAAGGAGUGCCUGGAGGAGCUGUCCAACACGUUGCAGAAGCAGGUGAGUCAUGAAGCCCAACAUGAAUAUUC
...((.((((.(((((...(((((..(((((((...)))))))....)))))...)))))..(((...(((....)))....))).))))))(((((........)))))...... ( -31.50)
>DroGri_CAF1 1 87 - 1
GAGCUCUAUCGUUCGAAUAGCUUUAAGUUCGAGCGUUUCGAGCGCAAGGAGUGCCUCGAGGAGCUCUCCAACACAUUGCAGAAGCAG-----------------------------
(((((((..(((((((((........)))))))))..(((((.(((.....)))))))))))))))..........(((....))).----------------------------- ( -33.60)
>DroWil_CAF1 1 87 - 1
GAGCUCUAUCGUUCCAAUAGCUUCAAGUUUGAACGUUUCGAGCGCAAGGAGUGCCUCGAAGAGCUCUCCAAUACAUUGCAGAAACAG-----------------------------
(((((((..(((((.(((........))).)))))..(((((.(((.....))))))))))))))).....................----------------------------- ( -25.80)
>DroYak_CAF1 1 87 - 1
GAACUGUACCGCUCCAACAGCUUCAAGUUCGAGCGAUUCGAGCGCAAGGAGUGCCUGGAGGAGUUGUCCAACACGUUGCAGAAGCAG-----------------------------
...(((((.(((((((...(((((..(((((((...)))))))....)))))...)))))..(((....))).)).)))))......----------------------------- ( -26.80)
>DroMoj_CAF1 1 87 - 1
GAGCUCUAUCGCUCGAACAGCUUCAAGUUUGAGCGCUUCGAGCGCAAGGAGUGCCUCGAGGAGCUCUCCAACACGUUGCAGAAGCAG-----------------------------
(((((((..(((((((((........)))))))))..(((((.(((.....)))))))))))))))..........(((....))).----------------------------- ( -35.50)
>DroAna_CAF1 1 87 - 1
GAGCUCUACCGCUCCAACAGCUUCAAGUUUGAGCGUUUUGAGCGCAAGGAGUGCCUCGAGGAGCUCUCCAACACCUUACAGAAGCAG-----------------------------
(((((((..(((((.(((........))).)))))..(((((.(((.....))))))))))))))).....................----------------------------- ( -28.10)
>consensus
GAGCUCUACCGCUCCAACAGCUUCAAGUUCGAGCGUUUCGAGCGCAAGGAGUGCCUCGAGGAGCUCUCCAACACGUUGCAGAAGCAG_____________________________
((((......)))).....(((((..(((((((...)))))))((((((((.(((.....).)).))))......)))).)))))............................... (-22.43 = -22.52 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:44 2006