Locus 4766

Sequence ID X_DroMel_CAF1
Location 12,392,121 – 12,392,212
Length 91
Max. P 0.522256
window7805

overview

Window 5

Location 12,392,121 – 12,392,212
Length 91
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 74.68
Mean single sequence MFE -15.67
Consensus MFE -2.76
Energy contribution -2.56
Covariance contribution -0.20
Combinations/Pair 1.25
Mean z-score -1.49
Structure conservation index 0.18
SVM decision value -0.02
SVM RNA-class probability 0.522256
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12392121 91 + 22224390
UGCAGAGCCAAUAAAAGGGAUAAAAUUGAAAACCAGACAGCGCAGUCACAAUCCGAAGGAUAUAUGUAUAUAUAUAUAUAUCCC--UAU-----CCCC
................((((((.............(((......)))..........(((((((((((....))))))))))).--)))-----))). ( -21.80)
>DroPse_CAF1 7774 83 + 1
UGCCAAGCCAAUAAAAGGGAUAAAAUUGAAAAGCAUCCGGGACACACACACUUCGAAGGAGGAGGAU----A----CCUCACAC--CAU-----CCCA
................(((((.....(((...(.(((((.....).....((((....)))).))))----.----).)))...--.))-----))). ( -15.80)
>DroSec_CAF1 5881 91 + 1
UGCAGAGCCAAUAAAAGGGAUAAAAUUGAAAACCAGACAGCGCAGUCACAAUCCCAAGGAUAUAUGUAUAUAAAUAUAUAUCCC--UAU-----CCCC
................((((((.............(((......)))..........((((((((((......)))))))))).--)))-----))). ( -20.90)
>DroEre_CAF1 5780 94 + 1
UGCAGAGCCAAUAAAAGGGAUAAAAUUGAAAAGCAGACAGCGCACUCACAGUCCCAAGGAUAUAUGU----CCCUAUCUCCAAUAAUAUGUACAUACG
((((...........(((((((....(((...((.....))....)))..((((...))))...)))----)))).............))))...... ( -13.95)
>DroYak_CAF1 10677 89 + 1
UGCAGAGCCAAUAAAAGGGAUAAAAUUGAAAACCAGACAGCGCACUCACAAUCCCAAGGAUACACAU----ACAUAUAUAUCACUAUAU-----CACC
....((..........(((((.....((.....))((........))...))))).((((((.....----.......)))).))...)-----)... (  -5.90)
>consensus
UGCAGAGCCAAUAAAAGGGAUAAAAUUGAAAACCAGACAGCGCACUCACAAUCCCAAGGAUAUAUGU____ACAUAUAUAUCAC__UAU_____CCCC
(((....((.......)).......(((.....))).....)))......((((...))))..................................... ( -2.76 =  -2.56 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:41 2006